Wall clock time and date at job start Mon Mar 30 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99684 * 2 1 4 4 H 1.48502 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47354 * 299.99642 * 3 2 1 6 6 H 1.48504 * 109.47191 * 59.99497 * 3 2 1 7 7 C 1.38807 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99785 * 0.28250 * 7 2 1 10 10 C 1.46497 * 120.00214 * 179.72274 * 9 7 2 11 11 H 1.09001 * 110.01680 * 326.88166 * 10 9 7 12 12 C 1.54266 * 110.03487 * 205.44009 * 10 9 7 13 13 C 1.54882 * 104.20064 * 217.10225 * 12 10 9 14 14 C 1.54901 * 102.74484 * 37.94167 * 13 12 10 15 15 C 1.53875 * 110.03517 * 88.27430 * 10 9 7 16 16 H 1.09000 * 110.03383 * 238.62095 * 15 10 9 17 17 C 1.50700 * 110.02881 * 359.97438 * 15 10 9 18 18 C 1.38247 * 119.98493 * 66.81471 * 17 15 10 19 19 C 1.38214 * 120.01284 * 179.72742 * 18 17 15 20 20 C 1.38350 * 119.98651 * 0.54007 * 19 18 17 21 21 Cl 1.73599 * 120.01697 * 179.75297 * 20 19 18 22 22 C 1.38358 * 119.97104 * 359.72696 * 20 19 18 23 23 C 1.38207 * 119.98756 * 0.02562 * 22 20 19 24 24 H 0.96996 * 120.00392 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99894 * 359.72258 * 9 7 2 26 26 H 1.09001 * 110.48818 * 335.78457 * 12 10 9 27 27 H 1.09008 * 110.48648 * 98.42442 * 12 10 9 28 28 H 1.09002 * 110.75966 * 279.63264 * 13 12 10 29 29 H 1.08997 * 110.91845 * 156.32810 * 13 12 10 30 30 H 1.09000 * 110.48229 * 203.37789 * 14 13 12 31 31 H 1.08999 * 110.47987 * 80.73601 * 14 13 12 32 32 H 1.08003 * 119.99468 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00843 * 180.27250 * 19 18 17 34 34 H 1.08002 * 120.00465 * 179.97438 * 22 20 19 35 35 H 1.08003 * 119.99045 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 -0.0048 10 6 2.0583 -3.6567 -0.0104 11 1 2.9877 -3.5484 -0.5694 12 6 1.1892 -4.7660 -0.6379 13 6 1.5215 -6.0272 0.1973 14 6 1.6629 -5.4597 1.6317 15 6 2.3595 -4.0978 1.4327 16 1 3.4351 -4.2036 1.5740 17 6 1.8085 -3.0884 2.4067 18 6 0.4419 -2.9165 2.5245 19 6 -0.0642 -1.9949 3.4216 20 6 0.7975 -1.2364 4.1937 21 17 0.1628 -0.0740 5.3162 22 6 2.1653 -1.4050 4.0714 23 6 2.6700 -2.3305 3.1776 24 1 -0.4850 0.8400 -0.0004 25 1 0.3558 -2.3880 -0.0049 26 1 0.1315 -4.5178 -0.5497 27 1 1.4605 -4.9180 -1.6827 28 1 2.4582 -6.4749 -0.1349 29 1 0.7093 -6.7524 0.1472 30 1 2.2799 -6.1181 2.2433 31 1 0.6817 -5.3236 2.0864 32 1 -0.2306 -3.5053 1.9183 33 1 -1.1320 -1.8638 3.5167 34 1 2.8385 -0.8128 4.6736 35 1 3.7377 -2.4624 3.0824 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372462697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:09 Heat of formation + Delta-G solvation = 20.675490 kcal Electronic energy + Delta-G solvation = -18492.420434 eV Core-core repulsion = 15708.800860 eV Total energy + Delta-G solvation = -2783.619575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37249 -37.20696 -35.69681 -33.54230 -30.96779 -30.48916 -30.28423 -27.03827 -26.37173 -23.31411 -22.11163 -21.50971 -20.19767 -18.71894 -17.08412 -16.48586 -15.47228 -15.15887 -14.43561 -14.21514 -13.89420 -13.26866 -13.00399 -12.85698 -12.74528 -12.62451 -11.92585 -11.72185 -11.39127 -10.97213 -10.81782 -10.69805 -10.61376 -10.44506 -10.35567 -10.26479 -10.11709 -10.02876 -9.83795 -9.59789 -8.85013 -8.18504 -7.65457 -6.87205 -5.71792 -2.97794 2.00414 2.13492 2.78594 3.46161 3.51703 3.54570 4.43032 4.63895 5.08780 5.12497 5.22337 5.49381 5.59472 5.66337 5.68806 5.85657 5.95083 6.00771 6.04539 6.08357 6.19163 6.21927 6.30372 6.35375 6.48583 6.50718 6.65033 6.71839 6.77384 6.90480 6.98532 7.08498 7.41204 7.63434 7.76501 8.45968 9.58692 10.14086 10.48548 11.50249 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.010293 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.552637 B = 2719.519277 C = 4076.520846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.002 4.002 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.066 0.934 9 N -0.712 5.712 10 C 0.178 3.822 11 H 0.053 0.947 12 C -0.129 4.129 13 C -0.123 4.123 14 C -0.116 4.116 15 C -0.085 4.085 16 H 0.065 0.935 17 C -0.008 4.008 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.039 4.039 21 Cl -0.101 7.101 22 C -0.116 4.116 23 C -0.106 4.106 24 H 0.252 0.748 25 H 0.384 0.616 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 -9.570 5.882 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.361 4.361 8 H 0.084 0.916 9 N -0.352 5.352 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.167 4.167 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.107 4.107 16 H 0.084 0.916 17 C -0.009 4.009 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.065 4.065 21 Cl -0.072 7.072 22 C -0.135 4.135 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.219 0.781 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.292 -9.287 5.941 11.260 hybrid contribution 0.141 1.423 0.036 1.430 sum 2.433 -7.864 5.977 10.173 Atomic orbital electron populations 1.69630 1.04884 1.25249 1.57378 1.24576 0.95295 0.97134 1.02848 0.86334 0.78975 0.85111 0.77171 1.20710 1.22106 1.21824 1.19107 0.90684 0.83989 1.42357 0.91636 1.42557 1.05596 0.99589 1.87428 1.20878 0.94850 0.86523 0.91067 0.92890 1.22656 1.00655 0.94718 0.98683 1.22438 1.00689 0.97269 0.95738 1.22468 1.00554 0.95779 0.96542 1.21727 0.98567 0.92555 0.97819 0.91625 1.19372 0.93043 0.95482 0.92974 1.20542 0.94812 0.97546 0.95742 1.20738 0.98840 0.96165 0.96044 1.20632 0.93664 0.95352 0.96845 1.98304 1.87501 1.59724 1.61712 1.20701 0.92899 0.99500 1.00404 1.20702 0.98910 0.96436 0.96432 0.93760 0.78128 0.91560 0.92150 0.91983 0.92238 0.92548 0.91480 0.86582 0.86424 0.86552 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 13.06 55.49 0.72 -26.14 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 3 Si 0.89 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.23 -6.04 9.18 -15.06 -0.14 -6.18 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.38 3.17 -52.35 -0.17 -16.55 16 10 C 0.18 3.29 3.49 -66.81 -0.23 3.05 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.13 -1.99 6.53 -25.08 -0.16 -2.15 16 13 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 14 C -0.12 -1.57 6.23 -25.07 -0.16 -1.73 16 15 C -0.08 -1.39 3.13 -90.66 -0.28 -1.67 16 16 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 17 C -0.01 -0.15 3.44 -104.62 -0.36 -0.51 16 18 C -0.07 -1.28 6.99 -39.59 -0.28 -1.56 16 19 C -0.10 -1.92 9.83 -39.55 -0.39 -2.30 16 20 C -0.04 -0.74 6.32 -39.50 -0.25 -0.99 16 21 Cl -0.10 -1.78 28.96 -51.86 -1.50 -3.28 16 22 C -0.12 -2.16 9.83 -39.55 -0.39 -2.54 16 23 C -0.11 -1.95 9.67 -39.59 -0.38 -2.33 16 24 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.38 9.49 6.82 -40.82 -0.28 9.21 16 26 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 27 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 32 H 0.12 2.11 7.14 -52.48 -0.37 1.73 16 33 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.11 1.88 7.98 -52.48 -0.42 1.46 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -28.37 300.02 -9.45 -37.82 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.72 Total: 6.87 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.29 Total: -20.81 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.56 Total: -42.69 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.50 Total: -3.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.37 -9.45 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372462697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.498 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds