Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99684 * 2 1 4 4 H 1.48502 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47354 * 299.99642 * 3 2 1 6 6 H 1.48504 * 109.47191 * 59.99497 * 3 2 1 7 7 C 1.38807 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99785 * 0.28250 * 7 2 1 10 10 C 1.46497 * 120.00214 * 179.72274 * 9 7 2 11 11 H 1.09001 * 110.01680 * 326.88166 * 10 9 7 12 12 C 1.54266 * 110.03487 * 205.44009 * 10 9 7 13 13 C 1.54882 * 104.20064 * 217.10225 * 12 10 9 14 14 C 1.54901 * 102.74484 * 37.94167 * 13 12 10 15 15 C 1.53875 * 110.03517 * 88.27430 * 10 9 7 16 16 H 1.09000 * 110.03383 * 238.62095 * 15 10 9 17 17 C 1.50700 * 110.02881 * 359.97438 * 15 10 9 18 18 C 1.38247 * 119.98493 * 66.81471 * 17 15 10 19 19 C 1.38214 * 120.01284 * 179.72742 * 18 17 15 20 20 C 1.38350 * 119.98651 * 0.54007 * 19 18 17 21 21 Cl 1.73599 * 120.01697 * 179.75297 * 20 19 18 22 22 C 1.38358 * 119.97104 * 359.72696 * 20 19 18 23 23 C 1.38207 * 119.98756 * 0.02562 * 22 20 19 24 24 H 0.96996 * 120.00392 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99894 * 359.72258 * 9 7 2 26 26 H 1.09001 * 110.48818 * 335.78457 * 12 10 9 27 27 H 1.09008 * 110.48648 * 98.42442 * 12 10 9 28 28 H 1.09002 * 110.75966 * 279.63264 * 13 12 10 29 29 H 1.08997 * 110.91845 * 156.32810 * 13 12 10 30 30 H 1.09000 * 110.48229 * 203.37789 * 14 13 12 31 31 H 1.08999 * 110.47987 * 80.73601 * 14 13 12 32 32 H 1.08003 * 119.99468 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00843 * 180.27250 * 19 18 17 34 34 H 1.08002 * 120.00465 * 179.97438 * 22 20 19 35 35 H 1.08003 * 119.99045 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 -0.0048 10 6 2.0583 -3.6567 -0.0104 11 1 2.9877 -3.5484 -0.5694 12 6 1.1892 -4.7660 -0.6379 13 6 1.5215 -6.0272 0.1973 14 6 1.6629 -5.4597 1.6317 15 6 2.3595 -4.0978 1.4327 16 1 3.4351 -4.2036 1.5740 17 6 1.8085 -3.0884 2.4067 18 6 0.4419 -2.9165 2.5245 19 6 -0.0642 -1.9949 3.4216 20 6 0.7975 -1.2364 4.1937 21 17 0.1628 -0.0740 5.3162 22 6 2.1653 -1.4050 4.0714 23 6 2.6700 -2.3305 3.1776 24 1 -0.4850 0.8400 -0.0004 25 1 0.3558 -2.3880 -0.0049 26 1 0.1315 -4.5178 -0.5497 27 1 1.4605 -4.9180 -1.6827 28 1 2.4582 -6.4749 -0.1349 29 1 0.7093 -6.7524 0.1472 30 1 2.2799 -6.1181 2.2433 31 1 0.6817 -5.3236 2.0864 32 1 -0.2306 -3.5053 1.9183 33 1 -1.1320 -1.8638 3.5167 34 1 2.8385 -0.8128 4.6736 35 1 3.7377 -2.4624 3.0824 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372462697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = 7.434099 kcal Electronic energy + Delta-G solvation = -18492.994624 eV Core-core repulsion = 15708.800860 eV Total energy + Delta-G solvation = -2784.193764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77223 -38.59447 -37.12079 -35.36795 -32.43127 -32.21374 -31.73189 -28.40256 -27.87375 -25.15438 -23.58660 -22.94012 -21.40068 -20.12928 -19.01774 -17.94261 -16.89582 -16.65824 -16.06877 -15.75648 -15.31717 -15.07221 -14.40483 -14.34932 -14.13474 -14.10203 -13.38934 -13.20922 -12.96588 -12.81342 -12.45138 -12.29522 -12.06994 -11.88526 -11.73073 -11.68735 -11.53806 -11.46478 -11.35083 -11.21314 -10.82301 -9.66142 -9.10824 -8.79182 -7.82162 -5.04248 0.54088 0.67171 1.33231 1.43389 1.46873 1.52328 2.61513 2.97828 3.53575 3.85436 3.88380 3.99641 4.11238 4.17865 4.40418 4.45781 4.63846 4.67182 4.77005 4.83012 4.92572 4.98006 4.98829 5.06944 5.17896 5.26216 5.34303 5.43619 5.48191 5.52706 5.61275 5.62145 5.68838 5.97980 6.20601 6.39283 7.48639 8.25068 8.47561 9.40407 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.010293 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.552637 B = 2719.519277 C = 4076.520846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.300 1.300 6 H -0.305 1.305 7 C -0.207 4.207 8 H 0.064 0.936 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.046 0.954 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.080 4.080 16 H 0.078 0.922 17 C -0.015 4.015 18 C -0.075 4.075 19 C -0.116 4.116 20 C -0.055 4.055 21 Cl -0.092 7.092 22 C -0.124 4.124 23 C -0.117 4.117 24 H 0.242 0.758 25 H 0.374 0.626 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -11.342 6.054 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.249 4.249 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.228 1.228 6 H -0.233 1.233 7 C -0.340 4.340 8 H 0.082 0.918 9 N -0.358 5.358 10 C 0.060 3.940 11 H 0.064 0.936 12 C -0.164 4.164 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.096 0.904 17 C -0.016 4.016 18 C -0.093 4.093 19 C -0.135 4.135 20 C -0.081 4.081 21 Cl -0.064 7.064 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.051 0.949 25 H 0.207 0.793 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.652 -11.106 6.119 13.196 hybrid contribution -0.225 1.904 -0.002 1.917 sum 3.427 -9.202 6.117 11.569 Atomic orbital electron populations 1.69743 1.05803 1.24747 1.60162 1.25039 0.95806 0.99236 1.04799 0.85624 0.78811 0.82763 0.76076 1.19415 1.22835 1.23288 1.19282 0.90606 0.85022 1.39061 0.91768 1.42652 1.05195 1.00389 1.87515 1.21158 0.94671 0.85582 0.92631 0.93575 1.22593 0.99250 0.95093 0.99418 1.22404 1.02315 0.96080 0.94053 1.22443 1.00372 0.94355 0.97614 1.21646 0.99595 0.93548 0.95338 0.90370 1.19646 0.92834 0.95850 0.93256 1.20662 0.95408 0.97583 0.95664 1.20923 0.99211 0.96714 0.96613 1.20826 0.94186 0.95789 0.97333 1.98297 1.87454 1.59336 1.61294 1.20998 0.92945 0.99696 1.00608 1.21042 1.00060 0.96209 0.96264 0.94851 0.79279 0.92766 0.91580 0.90204 0.90299 0.90277 0.91988 0.86384 0.86278 0.84905 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.32 13.06 21.65 0.28 -56.04 16 2 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 3 Si 0.93 46.56 29.55 68.60 2.03 48.59 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 7 C -0.21 -10.74 9.18 84.03 0.77 -9.97 16 8 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 9 N -0.72 -32.59 3.17 -319.52 -1.01 -33.61 16 10 C 0.17 5.92 3.49 45.72 0.16 6.08 16 11 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 12 C -0.13 -3.58 6.53 31.67 0.21 -3.38 16 13 C -0.11 -2.37 6.91 31.89 0.22 -2.15 16 14 C -0.11 -2.62 6.23 31.67 0.20 -2.42 16 15 C -0.08 -2.42 3.13 -10.82 -0.03 -2.45 16 16 H 0.08 2.18 7.93 -2.39 -0.02 2.16 16 17 C -0.02 -0.54 3.44 -19.86 -0.07 -0.61 16 18 C -0.07 -2.79 6.99 22.27 0.16 -2.63 16 19 C -0.12 -4.49 9.83 22.29 0.22 -4.27 16 20 C -0.06 -2.10 6.32 22.33 0.14 -1.96 16 21 Cl -0.09 -3.22 28.96 -2.72 -0.08 -3.30 16 22 C -0.12 -4.46 9.83 22.29 0.22 -4.24 16 23 C -0.12 -4.11 9.67 22.26 0.22 -3.89 16 24 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.37 18.54 6.82 -92.71 -0.63 17.90 16 26 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.56 6.40 -2.39 -0.02 1.54 16 32 H 0.12 4.26 7.14 -2.91 -0.02 4.24 16 33 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.13 4.07 7.98 -2.91 -0.02 4.04 16 Total: -1.00 -59.92 300.02 4.54 -55.38 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.45 Total: 23.51 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 2.87 Total: -34.53 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -0.73 Total: -89.64 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.08 Total: -3.30 kcal Total: -59.92 4.54 -55.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372462697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.812 kcal (2) G-P(sol) polarization free energy of solvation -59.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds