Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00370 * 2 1 4 4 H 1.48496 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46953 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99635 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00398 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.05276 * 33.90100 * 10 9 7 12 12 C 1.54267 * 110.03573 * 155.31797 * 10 9 7 13 13 C 1.54879 * 104.19948 * 142.89599 * 12 10 9 14 14 C 1.54895 * 102.74936 * 322.06086 * 13 12 10 15 15 C 1.53871 * 110.03333 * 272.48674 * 10 9 7 16 16 H 1.08995 * 110.03768 * 121.38022 * 15 10 9 17 17 C 1.50703 * 110.03322 * 359.97438 * 15 10 9 18 18 C 1.38241 * 119.98700 * 286.04058 * 17 15 10 19 19 C 1.38219 * 120.01107 * 179.72226 * 18 17 15 20 20 C 1.38359 * 119.98471 * 0.55208 * 19 18 17 21 21 Cl 1.73597 * 120.01173 * 179.70137 * 20 19 18 22 22 C 1.38350 * 119.97344 * 359.72205 * 20 19 18 23 23 C 1.38221 * 119.98789 * 0.02562 * 22 20 19 24 24 H 0.97008 * 119.99575 * 0.02562 * 1 2 3 25 25 H 0.97008 * 119.99692 * 0.02562 * 9 7 2 26 26 H 1.09008 * 110.48417 * 261.57731 * 12 10 9 27 27 H 1.09000 * 110.48470 * 24.08240 * 12 10 9 28 28 H 1.09007 * 110.75603 * 80.36848 * 13 12 10 29 29 H 1.08998 * 110.76341 * 203.74115 * 13 12 10 30 30 H 1.09007 * 110.48280 * 279.26563 * 14 13 12 31 31 H 1.08989 * 110.48894 * 156.62063 * 14 13 12 32 32 H 1.07995 * 119.99365 * 0.02562 * 18 17 15 33 33 H 1.07991 * 120.00745 * 180.27203 * 19 18 17 34 34 H 1.08000 * 120.00691 * 180.02562 * 22 20 19 35 35 H 1.07998 * 119.99274 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9809 -3.5551 0.5738 12 6 1.1816 -4.7724 0.6089 13 6 1.5236 -6.0251 -0.2353 14 6 1.6815 -5.4431 -1.6620 15 6 2.3758 -4.0833 -1.4411 16 1 3.4529 -4.1878 -1.5712 17 6 1.8351 -3.0646 -2.4112 18 6 0.4757 -2.9936 -2.6524 19 6 -0.0213 -2.0557 -3.5377 20 6 0.8432 -1.1953 -4.1911 21 17 0.2204 -0.0222 -5.3089 22 6 2.2040 -1.2707 -3.9535 23 6 2.6993 -2.2056 -3.0641 24 1 -0.4850 0.8402 -0.0004 25 1 0.3555 -2.3880 0.0016 26 1 1.4409 -4.9350 1.6552 27 1 0.1251 -4.5220 0.5131 28 1 2.4563 -6.4762 0.1033 29 1 0.7087 -6.7483 -0.2011 30 1 0.7056 -5.3021 -2.1267 31 1 2.3054 -6.0952 -2.2731 32 1 -0.1985 -3.6678 -2.1453 33 1 -1.0836 -1.9973 -3.7227 34 1 2.8792 -0.5991 -4.4629 35 1 3.7616 -2.2642 -2.8782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372462700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = 20.850934 kcal Electronic energy + Delta-G solvation = -18495.206415 eV Core-core repulsion = 15711.594448 eV Total energy + Delta-G solvation = -2783.611967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37016 -37.20966 -35.70155 -33.52940 -30.97145 -30.48475 -30.31111 -27.02155 -26.37382 -23.29814 -22.15832 -21.53138 -20.16327 -18.68738 -17.05621 -16.55922 -15.45144 -15.14139 -14.46732 -14.21192 -13.93446 -13.26082 -13.01130 -12.85342 -12.75610 -12.62471 -11.88598 -11.73176 -11.38124 -10.98883 -10.81561 -10.69909 -10.60897 -10.45903 -10.35455 -10.27373 -10.11203 -10.02294 -9.82009 -9.59010 -8.83480 -8.20477 -7.65745 -6.86901 -5.70555 -2.96780 2.00385 2.11953 2.78173 3.46343 3.51546 3.54773 4.42409 4.64507 5.08586 5.11245 5.22684 5.49461 5.58180 5.66742 5.68068 5.86579 5.95327 6.00660 6.01298 6.08750 6.18102 6.22306 6.30230 6.35632 6.48497 6.50727 6.65042 6.71433 6.77034 6.90135 6.97516 7.07484 7.39555 7.62482 7.76779 8.47171 9.59897 10.15805 10.50298 11.51632 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.010288 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.123172 B = 2720.836317 C = 4070.215676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.002 4.002 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.229 4.229 8 H 0.065 0.935 9 N -0.713 5.713 10 C 0.179 3.821 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.123 4.123 14 C -0.118 4.118 15 C -0.085 4.085 16 H 0.065 0.935 17 C -0.002 4.002 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.039 4.039 21 Cl -0.101 7.101 22 C -0.111 4.111 23 C -0.100 4.100 24 H 0.252 0.748 25 H 0.384 0.616 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -9.514 -6.027 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.360 4.360 8 H 0.083 0.917 9 N -0.353 5.353 10 C 0.068 3.932 11 H 0.070 0.930 12 C -0.167 4.167 13 C -0.161 4.161 14 C -0.156 4.156 15 C -0.107 4.107 16 H 0.084 0.916 17 C -0.003 4.003 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.065 4.065 21 Cl -0.072 7.072 22 C -0.130 4.130 23 C -0.119 4.119 24 H 0.062 0.938 25 H 0.218 0.782 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.490 -9.233 -6.089 11.337 hybrid contribution 0.110 1.419 -0.025 1.423 sum 2.601 -7.814 -6.114 10.257 Atomic orbital electron populations 1.69638 1.04898 1.25198 1.57469 1.24572 0.95272 0.97103 1.02916 0.86349 0.78973 0.85190 0.77189 1.20699 1.21820 1.22123 1.19094 0.90637 0.83987 1.42326 0.91664 1.42511 1.05594 0.99530 1.87617 1.20865 0.94760 0.86569 0.90970 0.92991 1.22650 1.00656 0.94752 0.98663 1.22436 1.00638 0.97284 0.95750 1.22506 1.00649 0.95814 0.96609 1.21750 0.98627 0.92476 0.97848 0.91606 1.19345 0.93034 0.95182 0.92710 1.20590 0.94870 0.98133 0.96507 1.20727 0.98616 0.95371 0.97103 1.20620 0.93804 0.94606 0.97513 1.98304 1.87925 1.59117 1.61871 1.20720 0.93090 0.99312 0.99893 1.20679 0.99137 0.95569 0.96487 0.93784 0.78158 0.92178 0.91537 0.91967 0.92245 0.91332 0.92554 0.86504 0.86449 0.86531 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 13.06 55.49 0.72 -26.35 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 3 Si 0.89 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 7 C -0.23 -6.01 8.87 -15.06 -0.13 -6.14 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.71 -16.46 3.36 -52.34 -0.18 -16.64 16 10 C 0.18 3.32 3.51 -66.82 -0.23 3.08 16 11 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 12 C -0.13 -2.00 6.53 -25.08 -0.16 -2.16 16 13 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 14 C -0.12 -1.60 6.23 -25.07 -0.16 -1.76 16 15 C -0.09 -1.39 3.13 -90.65 -0.28 -1.68 16 16 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 17 C 0.00 -0.04 3.31 -104.62 -0.35 -0.39 16 18 C -0.08 -1.54 7.69 -39.59 -0.30 -1.84 16 19 C -0.10 -1.89 9.83 -39.54 -0.39 -2.28 16 20 C -0.04 -0.75 6.32 -39.50 -0.25 -1.00 16 21 Cl -0.10 -1.78 28.96 -51.86 -1.50 -3.28 16 22 C -0.11 -2.09 9.83 -39.55 -0.39 -2.48 16 23 C -0.10 -1.86 9.35 -39.59 -0.37 -2.23 16 24 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.38 9.59 7.22 -40.82 -0.29 9.30 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.95 5.92 -51.93 -0.31 0.64 16 31 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 32 H 0.12 2.04 6.78 -52.49 -0.36 1.68 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.12 1.93 8.01 -52.49 -0.42 1.51 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -28.53 299.81 -9.44 -37.97 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.70 Total: 6.99 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.29 Total: -20.77 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.55 Total: -42.99 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.50 Total: -3.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.53 -9.44 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372462700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.820 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds