Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00370 * 2 1 4 4 H 1.48496 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46953 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99635 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00398 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.05276 * 33.90100 * 10 9 7 12 12 C 1.54267 * 110.03573 * 155.31797 * 10 9 7 13 13 C 1.54879 * 104.19948 * 142.89599 * 12 10 9 14 14 C 1.54895 * 102.74936 * 322.06086 * 13 12 10 15 15 C 1.53871 * 110.03333 * 272.48674 * 10 9 7 16 16 H 1.08995 * 110.03768 * 121.38022 * 15 10 9 17 17 C 1.50703 * 110.03322 * 359.97438 * 15 10 9 18 18 C 1.38241 * 119.98700 * 286.04058 * 17 15 10 19 19 C 1.38219 * 120.01107 * 179.72226 * 18 17 15 20 20 C 1.38359 * 119.98471 * 0.55208 * 19 18 17 21 21 Cl 1.73597 * 120.01173 * 179.70137 * 20 19 18 22 22 C 1.38350 * 119.97344 * 359.72205 * 20 19 18 23 23 C 1.38221 * 119.98789 * 0.02562 * 22 20 19 24 24 H 0.97008 * 119.99575 * 0.02562 * 1 2 3 25 25 H 0.97008 * 119.99692 * 0.02562 * 9 7 2 26 26 H 1.09008 * 110.48417 * 261.57731 * 12 10 9 27 27 H 1.09000 * 110.48470 * 24.08240 * 12 10 9 28 28 H 1.09007 * 110.75603 * 80.36848 * 13 12 10 29 29 H 1.08998 * 110.76341 * 203.74115 * 13 12 10 30 30 H 1.09007 * 110.48280 * 279.26563 * 14 13 12 31 31 H 1.08989 * 110.48894 * 156.62063 * 14 13 12 32 32 H 1.07995 * 119.99365 * 0.02562 * 18 17 15 33 33 H 1.07991 * 120.00745 * 180.27203 * 19 18 17 34 34 H 1.08000 * 120.00691 * 180.02562 * 22 20 19 35 35 H 1.07998 * 119.99274 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9809 -3.5551 0.5738 12 6 1.1816 -4.7724 0.6089 13 6 1.5236 -6.0251 -0.2353 14 6 1.6815 -5.4431 -1.6620 15 6 2.3758 -4.0833 -1.4411 16 1 3.4529 -4.1878 -1.5712 17 6 1.8351 -3.0646 -2.4112 18 6 0.4757 -2.9936 -2.6524 19 6 -0.0213 -2.0557 -3.5377 20 6 0.8432 -1.1953 -4.1911 21 17 0.2204 -0.0222 -5.3089 22 6 2.2040 -1.2707 -3.9535 23 6 2.6993 -2.2056 -3.0641 24 1 -0.4850 0.8402 -0.0004 25 1 0.3555 -2.3880 0.0016 26 1 1.4409 -4.9350 1.6552 27 1 0.1251 -4.5220 0.5131 28 1 2.4563 -6.4762 0.1033 29 1 0.7087 -6.7483 -0.2011 30 1 0.7056 -5.3021 -2.1267 31 1 2.3054 -6.0952 -2.2731 32 1 -0.1985 -3.6678 -2.1453 33 1 -1.0836 -1.9973 -3.7227 34 1 2.8792 -0.5991 -4.4629 35 1 3.7616 -2.2642 -2.8782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372462700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = 7.339929 kcal Electronic energy + Delta-G solvation = -18495.792296 eV Core-core repulsion = 15711.594448 eV Total energy + Delta-G solvation = -2784.197848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76482 -38.59537 -37.12373 -35.36255 -32.42169 -32.22303 -31.75314 -28.38480 -27.87773 -25.14111 -23.62461 -22.95993 -21.36971 -20.09632 -19.00323 -17.99987 -16.87701 -16.64599 -16.04509 -15.80004 -15.35788 -15.06353 -14.43138 -14.31661 -14.15223 -14.10997 -13.36121 -13.21418 -12.93030 -12.81585 -12.45930 -12.29621 -12.06874 -11.89301 -11.73157 -11.70032 -11.53520 -11.47404 -11.34575 -11.17232 -10.81914 -9.66792 -9.10669 -8.80238 -7.81661 -5.03792 0.54412 0.66008 1.33124 1.43447 1.46678 1.52380 2.61863 2.97613 3.54075 3.85736 3.87095 4.00019 4.11543 4.16860 4.40291 4.45903 4.62897 4.67165 4.76188 4.82639 4.92379 4.98427 4.99116 5.06961 5.17647 5.26479 5.34552 5.43761 5.46980 5.52293 5.60985 5.62678 5.69124 5.96971 6.20365 6.39763 7.49137 8.25874 8.48256 9.41258 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.010288 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.123172 B = 2720.836317 C = 4070.215676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.057 4.057 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.301 1.301 7 C -0.204 4.204 8 H 0.065 0.935 9 N -0.719 5.719 10 C 0.170 3.830 11 H 0.045 0.955 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.080 4.080 16 H 0.077 0.923 17 C -0.010 4.010 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.056 4.056 21 Cl -0.092 7.092 22 C -0.122 4.122 23 C -0.113 4.113 24 H 0.242 0.758 25 H 0.373 0.627 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -11.344 -6.131 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.249 4.249 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.233 1.233 6 H -0.229 1.229 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.358 5.358 10 C 0.061 3.939 11 H 0.064 0.936 12 C -0.164 4.164 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.102 4.102 16 H 0.096 0.904 17 C -0.010 4.010 18 C -0.107 4.107 19 C -0.133 4.133 20 C -0.082 4.082 21 Cl -0.064 7.064 22 C -0.140 4.140 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.206 0.794 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.687 -11.109 -6.199 13.245 hybrid contribution -0.201 1.916 -0.002 1.927 sum 3.486 -9.193 -6.201 11.624 Atomic orbital electron populations 1.69754 1.05877 1.24703 1.60365 1.25034 0.95765 0.99239 1.04910 0.85636 0.78876 0.82807 0.76068 1.19288 1.23275 1.22929 1.19278 0.90594 0.84961 1.38819 0.91694 1.42617 1.05170 1.00390 1.87631 1.21149 0.94612 0.85601 0.92548 0.93644 1.22588 0.99223 0.95096 0.99449 1.22404 1.02244 0.96104 0.94072 1.22483 1.00543 0.94353 0.97646 1.21657 0.99642 0.93499 0.95362 0.90411 1.19618 0.92946 0.95554 0.92926 1.20765 0.95390 0.98185 0.96358 1.20955 0.99140 0.95745 0.97495 1.20819 0.94260 0.95073 0.98061 1.98297 1.87855 1.58748 1.61489 1.20993 0.93256 0.99694 1.00097 1.20988 1.00130 0.95532 0.96494 0.94894 0.79384 0.91618 0.92758 0.90220 0.90281 0.91700 0.90315 0.85753 0.85884 0.85187 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.78 13.06 21.65 0.28 -56.50 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 3 Si 0.93 46.53 29.55 68.60 2.03 48.56 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 6 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 7 C -0.20 -10.55 8.87 84.03 0.74 -9.80 16 8 H 0.07 3.33 7.83 -2.91 -0.02 3.31 16 9 N -0.72 -32.68 3.36 -319.51 -1.07 -33.75 16 10 C 0.17 5.96 3.51 45.72 0.16 6.12 16 11 H 0.05 1.65 8.09 -2.38 -0.02 1.64 16 12 C -0.13 -3.58 6.53 31.67 0.21 -3.38 16 13 C -0.11 -2.36 6.91 31.88 0.22 -2.14 16 14 C -0.11 -2.66 6.23 31.67 0.20 -2.46 16 15 C -0.08 -2.42 3.13 -10.82 -0.03 -2.46 16 16 H 0.08 2.17 7.98 -2.39 -0.02 2.15 16 17 C -0.01 -0.35 3.31 -19.86 -0.07 -0.42 16 18 C -0.09 -3.23 7.69 22.27 0.17 -3.06 16 19 C -0.11 -4.35 9.83 22.29 0.22 -4.13 16 20 C -0.06 -2.13 6.32 22.33 0.14 -1.99 16 21 Cl -0.09 -3.22 28.96 -2.72 -0.08 -3.30 16 22 C -0.12 -4.47 9.83 22.29 0.22 -4.25 16 23 C -0.11 -4.04 9.35 22.27 0.21 -3.83 16 24 H 0.24 14.41 8.31 -92.70 -0.77 13.63 16 25 H 0.37 18.64 7.22 -92.70 -0.67 17.97 16 26 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.05 1.70 7.73 -2.39 -0.02 1.68 16 28 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.60 5.92 -2.38 -0.01 1.59 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 4.24 6.78 -2.91 -0.02 4.22 16 33 H 0.12 4.38 8.06 -2.92 -0.02 4.36 16 34 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.13 4.13 8.01 -2.91 -0.02 4.11 16 Total: -1.00 -60.21 299.81 4.43 -55.78 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.42 Total: 23.70 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 2.86 Total: -34.48 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -0.79 Total: -90.25 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.08 Total: -3.30 kcal Total: -60.21 4.43 -55.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372462700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.116 kcal (2) G-P(sol) polarization free energy of solvation -60.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds