Wall clock time and date at job start Mon Mar 30 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46624 * 299.99555 * 3 2 1 6 6 H 1.48498 * 109.47087 * 59.99499 * 3 2 1 7 7 C 1.37878 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00005 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46865 * 299.99743 * 9 7 2 11 11 N 1.46903 * 109.47112 * 59.99274 * 9 7 2 12 12 C 1.50695 * 109.47478 * 180.02562 * 9 7 2 13 13 C 1.37958 * 120.11673 * 264.97597 * 12 9 7 14 14 C 1.38884 * 120.55935 * 179.97438 * 13 12 9 15 15 C 1.37707 * 119.70552 * 359.85035 * 14 13 12 16 16 C 1.38855 * 119.69960 * 0.32329 * 15 14 13 17 17 C 1.38095 * 120.52823 * 359.72994 * 16 15 14 18 18 Cl 1.73603 * 120.12463 * 180.02562 * 17 16 15 19 19 C 1.50633 * 122.55404 * 180.67920 * 15 14 13 20 20 C 1.52734 * 110.58336 * 342.09461 * 19 15 14 21 21 C 1.53320 * 108.38944 * 51.15060 * 20 19 15 22 22 C 1.50637 * 117.74000 * 179.65629 * 14 13 12 23 23 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 24 24 H 1.00891 * 110.99910 * 60.00682 * 11 9 7 25 25 H 1.00901 * 110.99505 * 183.95595 * 11 9 7 26 26 H 1.07997 * 119.72260 * 359.91559 * 13 12 9 27 27 H 1.07996 * 119.73016 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.25582 * 221.80580 * 19 15 14 29 29 H 1.09004 * 109.22376 * 102.36417 * 19 15 14 30 30 H 1.09000 * 109.68301 * 291.41973 * 20 19 15 31 31 H 1.09010 * 109.71083 * 170.88555 * 20 19 15 32 32 H 1.08996 * 109.67883 * 170.41538 * 21 20 19 33 33 H 1.09000 * 109.68018 * 49.86301 * 21 20 19 34 34 H 1.09002 * 109.25392 * 282.62221 * 22 14 13 35 35 H 1.08998 * 109.25250 * 42.04973 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 0.4069 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.6016 -4.2392 -1.1864 14 6 3.5038 -5.2950 -1.1960 15 6 4.0343 -5.7501 -0.0095 16 6 3.6573 -5.1535 1.1864 17 6 2.7593 -4.1044 1.1944 18 17 2.2958 -3.3658 2.6955 19 6 5.0284 -6.8801 0.0534 20 6 5.0042 -7.6893 -1.2417 21 6 5.1444 -6.7193 -2.4208 22 6 3.8586 -5.9021 -2.5282 23 1 -0.4850 0.8401 -0.0004 24 1 0.9651 -2.5260 -2.0380 25 1 -0.1570 -3.4138 -1.1906 26 1 2.1866 -3.8812 -2.1169 27 1 4.0734 -5.5097 2.1171 28 1 4.7783 -7.5328 0.8899 29 1 6.0277 -6.4711 0.2032 30 1 4.0601 -8.2284 -1.3201 31 1 5.8330 -8.3973 -1.2484 32 1 5.3003 -7.2811 -3.3417 33 1 5.9896 -6.0527 -2.2492 34 1 3.0463 -6.5514 -2.8550 35 1 3.9985 -5.1064 -3.2599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380661984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:15 Heat of formation + Delta-G solvation = -2.237241 kcal Electronic energy + Delta-G solvation = -17874.594205 eV Core-core repulsion = 15089.981060 eV Total energy + Delta-G solvation = -2784.613145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.79505 -36.75693 -35.45759 -33.98815 -32.23876 -31.31307 -29.42547 -28.08307 -26.05542 -23.70580 -22.67457 -21.99061 -20.59256 -18.74854 -16.42453 -16.12725 -15.55353 -15.13177 -14.51041 -14.23963 -13.92868 -13.82089 -13.61662 -13.15881 -12.76798 -12.53354 -12.26469 -11.98755 -11.95647 -11.45979 -11.04222 -10.91704 -10.79138 -10.69120 -10.46764 -10.34979 -10.29563 -10.14212 -9.61785 -9.19861 -8.39948 -8.16705 -7.72404 -7.10988 -5.83570 -3.97151 1.69030 1.84096 2.91093 3.35426 3.43472 3.47617 4.09985 4.53838 4.75885 4.78275 4.87938 5.20293 5.22646 5.37828 5.43882 5.57307 5.58787 5.62026 5.74246 5.84211 5.94110 6.00911 6.01811 6.16281 6.25060 6.28069 6.33485 6.53382 6.77461 6.89763 7.01514 7.38574 7.51826 7.94454 8.21906 8.63496 8.99849 9.16713 9.70313 11.21021 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.006312 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.662280 B = 4435.164327 C = 4947.948229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.252 3.748 10 H 0.060 0.940 11 N -0.809 5.809 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.075 4.075 15 C -0.096 4.096 16 C -0.117 4.117 17 C -0.031 4.031 18 Cl -0.068 7.068 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.078 4.078 23 H 0.254 0.746 24 H 0.317 0.683 25 H 0.298 0.702 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -14.041 -1.972 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.121 4.121 3 Si 0.709 3.291 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.142 3.858 10 H 0.077 0.923 11 N -0.336 5.336 12 C -0.068 4.068 13 C -0.141 4.141 14 C -0.076 4.076 15 C -0.097 4.097 16 C -0.136 4.136 17 C -0.059 4.059 18 Cl -0.039 7.039 19 C -0.110 4.110 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.115 4.115 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.558 -13.160 -1.572 15.257 hybrid contribution 1.006 0.251 -0.008 1.037 sum 8.564 -12.909 -1.580 15.572 Atomic orbital electron populations 1.70111 1.05602 1.25473 1.46989 1.24896 0.94599 0.98368 0.94275 0.86732 0.80341 0.84541 0.77482 1.19909 1.21094 1.21080 1.20704 0.92028 0.89049 1.54013 0.92992 1.18319 0.87590 0.88534 0.91323 0.92285 1.59190 1.28015 1.42010 1.04341 1.21666 0.97716 0.96895 0.90490 1.20947 0.98816 0.96346 0.97953 1.19547 0.97367 0.96475 0.94165 1.19243 0.99825 0.98652 0.91936 1.20925 0.98275 0.96416 0.97960 1.20689 1.00518 0.96799 0.87858 1.98338 1.91375 1.82473 1.31708 1.20361 0.97752 0.94794 0.98062 1.21528 1.01825 0.97518 0.94654 1.21534 0.97917 0.98008 0.98144 1.20428 0.97575 0.99145 0.94328 0.93564 0.87020 0.89139 0.85934 0.86184 0.91266 0.91138 0.91742 0.91829 0.91789 0.91688 0.90990 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.69 12.77 55.43 0.71 -23.99 16 2 C 0.09 2.38 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.52 -14.20 8.71 -34.44 -0.30 -14.50 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.25 6.19 2.37 -70.02 -0.17 6.03 16 10 H 0.06 1.61 7.14 -51.93 -0.37 1.24 16 11 N -0.81 -18.77 8.14 -6.65 -0.05 -18.82 16 12 C -0.06 -1.36 4.98 -104.69 -0.52 -1.88 16 13 C -0.12 -2.25 8.85 -39.45 -0.35 -2.60 16 14 C -0.08 -1.19 5.74 -104.61 -0.60 -1.79 16 15 C -0.10 -1.47 5.74 -104.62 -0.60 -2.07 16 16 C -0.12 -1.97 9.40 -39.41 -0.37 -2.34 16 17 C -0.03 -0.62 6.31 -39.60 -0.25 -0.87 16 18 Cl -0.07 -1.36 27.43 -51.86 -1.42 -2.78 16 19 C -0.07 -0.84 5.67 -28.05 -0.16 -1.00 16 20 C -0.12 -1.17 5.98 -26.70 -0.16 -1.33 16 21 C -0.12 -1.22 5.98 -26.70 -0.16 -1.38 16 22 C -0.08 -0.96 5.67 -28.05 -0.16 -1.12 16 23 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.32 6.93 7.21 -39.30 -0.28 6.65 16 25 H 0.30 6.20 9.06 -39.29 -0.36 5.85 16 26 H 0.12 2.15 6.27 -52.49 -0.33 1.82 16 27 H 0.12 1.76 8.05 -52.49 -0.42 1.34 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 298.76 15.07 4.50 4.50 Total: -1.00 -29.65 298.76 -9.86 -39.51 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.68 Total: 7.57 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.89 Total: -22.58 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.65 Total: -42.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.42 Total: -2.78 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.65 -9.86 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380661984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.271 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds