Wall clock time and date at job start Mon Mar 30 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46624 * 299.99555 * 3 2 1 6 6 H 1.48498 * 109.47087 * 59.99499 * 3 2 1 7 7 C 1.37878 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00005 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46865 * 299.99743 * 9 7 2 11 11 N 1.46903 * 109.47112 * 59.99274 * 9 7 2 12 12 C 1.50695 * 109.47478 * 180.02562 * 9 7 2 13 13 C 1.37958 * 120.11673 * 264.97597 * 12 9 7 14 14 C 1.38884 * 120.55935 * 179.97438 * 13 12 9 15 15 C 1.37707 * 119.70552 * 359.85035 * 14 13 12 16 16 C 1.38855 * 119.69960 * 0.32329 * 15 14 13 17 17 C 1.38095 * 120.52823 * 359.72994 * 16 15 14 18 18 Cl 1.73603 * 120.12463 * 180.02562 * 17 16 15 19 19 C 1.50633 * 122.55404 * 180.67920 * 15 14 13 20 20 C 1.52734 * 110.58336 * 342.09461 * 19 15 14 21 21 C 1.53320 * 108.38944 * 51.15060 * 20 19 15 22 22 C 1.50637 * 117.74000 * 179.65629 * 14 13 12 23 23 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 24 24 H 1.00891 * 110.99910 * 60.00682 * 11 9 7 25 25 H 1.00901 * 110.99505 * 183.95595 * 11 9 7 26 26 H 1.07997 * 119.72260 * 359.91559 * 13 12 9 27 27 H 1.07996 * 119.73016 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.25582 * 221.80580 * 19 15 14 29 29 H 1.09004 * 109.22376 * 102.36417 * 19 15 14 30 30 H 1.09000 * 109.68301 * 291.41973 * 20 19 15 31 31 H 1.09010 * 109.71083 * 170.88555 * 20 19 15 32 32 H 1.08996 * 109.67883 * 170.41538 * 21 20 19 33 33 H 1.09000 * 109.68018 * 49.86301 * 21 20 19 34 34 H 1.09002 * 109.25392 * 282.62221 * 22 14 13 35 35 H 1.08998 * 109.25250 * 42.04973 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 0.4069 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.6016 -4.2392 -1.1864 14 6 3.5038 -5.2950 -1.1960 15 6 4.0343 -5.7501 -0.0095 16 6 3.6573 -5.1535 1.1864 17 6 2.7593 -4.1044 1.1944 18 17 2.2958 -3.3658 2.6955 19 6 5.0284 -6.8801 0.0534 20 6 5.0042 -7.6893 -1.2417 21 6 5.1444 -6.7193 -2.4208 22 6 3.8586 -5.9021 -2.5282 23 1 -0.4850 0.8401 -0.0004 24 1 0.9651 -2.5260 -2.0380 25 1 -0.1570 -3.4138 -1.1906 26 1 2.1866 -3.8812 -2.1169 27 1 4.0734 -5.5097 2.1171 28 1 4.7783 -7.5328 0.8899 29 1 6.0277 -6.4711 0.2032 30 1 4.0601 -8.2284 -1.3201 31 1 5.8330 -8.3973 -1.2484 32 1 5.3003 -7.2811 -3.3417 33 1 5.9896 -6.0527 -2.2492 34 1 3.0463 -6.5514 -2.8550 35 1 3.9985 -5.1064 -3.2599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380661984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:15 Heat of formation + Delta-G solvation = -19.194353 kcal Electronic energy + Delta-G solvation = -17875.329521 eV Core-core repulsion = 15089.981060 eV Total energy + Delta-G solvation = -2785.348461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06886 -38.07958 -37.01463 -35.53198 -33.78219 -32.91967 -30.75710 -29.34516 -28.00166 -25.11953 -23.90307 -23.19768 -22.08302 -19.94622 -18.49668 -17.46480 -16.92235 -16.63980 -16.08758 -15.91355 -15.25050 -14.92816 -14.66687 -14.54200 -14.35849 -14.01312 -13.62986 -13.30669 -13.17348 -13.00549 -12.81744 -12.58027 -12.36710 -12.00118 -11.77612 -11.68602 -11.66892 -11.29083 -11.16121 -11.09628 -10.53650 -9.58042 -9.18007 -8.91360 -7.96251 -6.15568 0.31093 0.44958 1.39399 1.41692 1.42246 1.51926 2.45302 2.74581 3.27387 3.76021 3.79906 3.98622 4.09319 4.21348 4.28381 4.34937 4.44702 4.57590 4.69266 4.72495 4.87767 4.94191 5.04645 5.06418 5.15158 5.16151 5.27017 5.34448 5.46543 5.51051 5.66508 5.72549 5.78818 6.04087 6.21096 6.66663 7.10536 7.24917 7.54917 9.07382 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.006312 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.662280 B = 4435.164327 C = 4947.948229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.037 0.963 9 C 0.261 3.739 10 H 0.023 0.977 11 N -0.819 5.819 12 C -0.096 4.096 13 C -0.129 4.129 14 C -0.073 4.073 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.053 4.053 18 Cl -0.083 7.083 19 C -0.074 4.074 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.079 4.079 23 H 0.254 0.746 24 H 0.323 0.677 25 H 0.311 0.689 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 -15.979 -2.969 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.151 3.849 10 H 0.041 0.959 11 N -0.347 5.347 12 C -0.099 4.099 13 C -0.148 4.148 14 C -0.074 4.074 15 C -0.089 4.089 16 C -0.136 4.136 17 C -0.080 4.080 18 Cl -0.054 7.054 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.116 4.116 23 H 0.063 0.937 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.142 0.858 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.654 -15.108 -2.573 18.113 hybrid contribution 0.406 0.738 0.281 0.888 sum 10.060 -14.370 -2.292 17.690 Atomic orbital electron populations 1.70224 1.06829 1.26084 1.48410 1.25568 0.95341 1.01362 0.94237 0.85815 0.79074 0.80948 0.77560 1.19791 1.20495 1.20813 1.20903 0.91435 0.90750 1.53163 0.94450 1.17863 0.87714 0.89086 0.90245 0.95931 1.58990 1.28413 1.43041 1.04241 1.21336 0.98921 0.97364 0.92280 1.21060 0.99560 0.97202 0.96959 1.19971 0.95839 0.95244 0.96306 1.19787 0.99294 0.98817 0.90962 1.21234 0.97274 0.95341 0.99757 1.20894 1.01950 0.98191 0.86988 1.98320 1.91680 1.82963 1.32421 1.20496 0.96866 0.93797 0.99910 1.21552 1.02994 0.97499 0.93198 1.21556 0.96274 0.97932 0.99608 1.20530 0.99333 0.99650 0.92065 0.93667 0.86314 0.87775 0.85767 0.84014 0.89702 0.89984 0.91690 0.89264 0.89420 0.92072 0.89675 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.46 12.77 21.45 0.27 -52.19 16 2 C 0.04 2.18 5.39 84.66 0.46 2.63 16 3 Si 0.94 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.52 -29.43 8.71 25.60 0.22 -29.20 16 8 H 0.04 2.16 7.74 -2.91 -0.02 2.13 16 9 C 0.26 13.27 2.37 43.42 0.10 13.38 16 10 H 0.02 1.31 7.14 -2.38 -0.02 1.29 16 11 N -0.82 -39.00 8.14 -174.95 -1.42 -40.42 16 12 C -0.10 -4.14 4.98 -19.91 -0.10 -4.23 16 13 C -0.13 -4.73 8.85 22.36 0.20 -4.53 16 14 C -0.07 -2.18 5.74 -19.86 -0.11 -2.29 16 15 C -0.09 -2.48 5.74 -19.86 -0.11 -2.59 16 16 C -0.12 -3.80 9.40 22.38 0.21 -3.59 16 17 C -0.05 -2.13 6.31 22.26 0.14 -1.99 16 18 Cl -0.08 -3.40 27.43 -2.72 -0.07 -3.48 16 19 C -0.07 -1.42 5.67 29.74 0.17 -1.25 16 20 C -0.12 -1.76 5.98 30.61 0.18 -1.57 16 21 C -0.12 -1.92 5.98 30.61 0.18 -1.73 16 22 C -0.08 -1.71 5.67 29.74 0.17 -1.54 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.32 14.43 7.21 -89.70 -0.65 13.79 16 25 H 0.31 13.28 9.06 -89.69 -0.81 12.46 16 26 H 0.12 4.36 6.27 -2.91 -0.02 4.34 16 27 H 0.14 3.87 8.05 -2.91 -0.02 3.84 16 28 H 0.08 1.41 8.13 -2.38 -0.02 1.39 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -65.13 298.76 2.16 -62.96 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.35 Total: 24.51 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 1.71 Total: -38.52 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -1.15 Total: -92.61 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.07 Total: -3.48 kcal Total: -65.13 2.16 -62.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380661984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.767 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds