Wall clock time and date at job start Mon Mar 30 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 H 1.08994 * 109.47152 * 55.00111 * 3 2 1 5 5 S 1.81398 * 109.46897 * 295.00074 * 3 2 1 6 6 C 1.50699 * 109.47175 * 175.00111 * 3 2 1 7 7 O 1.21278 * 119.99947 * 34.99922 * 6 3 2 8 8 N 1.34772 * 120.00150 * 214.99943 * 6 3 2 9 9 C 1.39234 * 120.00109 * 175.70689 * 8 6 3 10 10 C 1.39481 * 119.83614 * 215.01354 * 9 8 6 11 11 C 1.36376 * 120.16993 * 179.75940 * 10 9 8 12 12 C 1.40873 * 119.82618 * 0.51810 * 11 10 9 13 13 C 1.41156 * 120.16285 * 179.71695 * 12 11 10 14 14 H 1.07995 * 120.00089 * 214.80386 * 13 12 11 15 15 C 1.39912 * 119.99762 * 34.79915 * 13 12 11 16 16 N 1.30867 * 120.00172 * 355.56311 * 15 13 12 17 17 Si 1.86800 * 119.99481 * 175.56034 * 15 13 12 18 18 H 1.48490 * 109.47339 * 60.00553 * 17 15 13 19 19 H 1.48503 * 109.46545 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47087 * 299.99874 * 17 15 13 21 21 C 1.40870 * 119.67257 * 359.73602 * 12 11 10 22 22 C 1.36369 * 119.82549 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.47042 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47242 * 299.99438 * 1 2 3 25 25 H 1.08996 * 109.47416 * 59.99833 * 1 2 3 26 26 H 1.09003 * 109.46948 * 240.00106 * 2 1 3 27 27 H 1.08996 * 109.47416 * 120.00167 * 2 1 3 28 28 H 1.34499 * 103.00373 * 300.00135 * 5 3 2 29 29 H 0.96997 * 119.99946 * 355.71263 * 8 6 3 30 30 H 1.08000 * 119.91064 * 0.02562 * 10 9 8 31 31 H 1.07997 * 120.08756 * 180.25508 * 11 10 9 32 32 H 0.96995 * 120.00045 * 179.97438 * 16 15 13 33 33 H 1.07999 * 120.08250 * 179.97438 * 21 12 11 34 34 H 1.08008 * 119.91212 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 16 1.5600 2.2535 -1.5500 6 6 3.5418 1.4444 0.1238 7 8 4.1947 0.5677 -0.4015 8 7 4.1595 2.4204 0.8183 9 6 5.5380 2.3739 1.0085 10 6 6.0900 2.8397 2.2018 11 6 7.4389 2.7929 2.3973 12 6 8.2761 2.2825 1.3859 13 6 9.6737 2.2362 1.5783 14 1 10.3394 2.4003 0.7439 15 6 10.1966 1.9779 2.8501 16 7 9.3935 1.8654 3.8773 17 14 12.0410 1.7936 3.0818 18 1 12.7201 3.0457 2.6623 19 1 12.3356 1.5255 4.5124 20 1 12.5331 0.6625 2.2551 21 6 7.7117 1.8188 0.1813 22 6 6.3607 1.8676 0.0024 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.1567 1.4943 -2.4862 29 1 3.6438 3.1551 1.1857 30 1 5.4471 3.2345 2.9746 31 1 7.8644 3.1501 3.3234 32 1 9.7559 1.6860 4.7589 33 1 8.3475 1.4266 -0.5987 34 1 5.9265 1.5129 -0.9208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393369533.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:34 Heat of formation + Delta-G solvation = -23.170505 kcal Electronic energy + Delta-G solvation = -17238.627137 eV Core-core repulsion = 14455.149963 eV Total energy + Delta-G solvation = -2783.477173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87597 -37.42623 -34.78588 -34.37745 -32.95714 -29.68250 -29.31755 -27.87738 -24.88046 -22.42680 -21.44491 -20.75550 -19.79209 -18.02725 -17.45240 -17.09811 -16.32463 -15.24079 -15.08150 -14.58529 -14.26576 -13.98210 -13.72290 -13.01425 -12.74928 -12.54128 -12.17453 -11.97106 -11.84763 -11.70001 -11.39328 -11.18987 -11.16078 -11.04140 -10.77502 -10.47251 -10.08067 -9.55364 -9.50970 -9.23947 -8.94005 -8.17592 -7.58658 -6.91026 -6.65059 -4.37751 1.28675 2.36598 2.66288 3.05387 3.06252 3.07912 3.10742 3.28556 3.59404 3.95773 4.45102 4.66604 4.71230 4.95728 5.20390 5.29748 5.56523 5.62501 5.83037 5.91202 6.14045 6.15680 6.38891 6.69360 6.85804 7.02768 7.15594 7.25349 7.59764 7.68169 7.79770 8.02052 8.19079 8.27373 8.55579 8.64651 8.89241 8.95585 10.25940 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.047729 B = 0.003846 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.510031 B = 7277.668248 C = 7373.991279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.060 4.060 4 H 0.132 0.868 5 S -0.210 6.210 6 C 0.501 3.499 7 O -0.530 6.530 8 N -0.637 5.637 9 C -0.001 4.001 10 C -0.118 4.118 11 C -0.141 4.141 12 C 0.102 3.898 13 C -0.461 4.461 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.811 5.811 17 Si 0.916 3.084 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.207 4.207 22 C -0.083 4.083 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.279 0.721 33 H 0.096 0.904 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 0.702 -2.773 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.193 4.193 4 H 0.150 0.850 5 S -0.057 6.057 6 C 0.285 3.715 7 O -0.407 6.407 8 N -0.279 5.279 9 C -0.093 4.093 10 C -0.138 4.138 11 C -0.161 4.161 12 C 0.099 3.901 13 C -0.492 4.492 14 H 0.094 0.906 15 C -0.145 4.145 16 N -0.438 5.438 17 Si 0.741 3.259 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.227 4.227 22 C -0.103 4.103 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.233 0.767 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.342 0.579 -3.496 13.804 hybrid contribution 1.312 -0.902 0.543 1.682 sum -12.029 -0.322 -2.953 12.391 Atomic orbital electron populations 1.21886 0.94174 1.02062 1.03075 1.21622 0.96779 0.92292 1.04030 1.23272 0.96278 1.01778 0.97944 0.85013 1.87167 1.69819 1.44749 1.03984 1.20232 0.88692 0.82145 0.80480 1.90710 1.66069 1.37277 1.46689 1.42912 1.07624 1.24036 1.53328 1.17259 0.80325 1.14994 0.96704 1.20313 0.96098 1.03393 0.93974 1.21198 0.91275 1.02215 1.01451 1.17727 0.93712 0.87893 0.90737 1.19488 0.92086 1.43072 0.94524 0.90595 1.25884 1.00331 0.92930 0.95374 1.69745 1.36579 1.36999 1.00466 0.86235 0.82063 0.79757 0.77819 1.19012 1.20393 1.19093 1.20801 0.93467 1.08132 1.00260 1.20364 0.93330 0.99737 0.96905 0.92353 0.92393 0.91040 0.90986 0.90305 0.94108 0.76729 0.88936 0.84950 0.91031 0.88606 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.74 37.16 0.36 -0.95 16 2 C -0.11 -1.21 4.98 -26.73 -0.13 -1.35 16 3 C -0.06 -0.73 2.93 -27.88 -0.08 -0.81 16 4 H 0.13 1.22 8.13 -51.93 -0.42 0.80 16 5 S -0.21 -2.48 24.03 -107.50 -2.58 -5.07 16 6 C 0.50 8.49 6.67 -10.99 -0.07 8.42 16 7 O -0.53 -11.21 13.79 5.56 0.08 -11.13 16 8 N -0.64 -10.98 5.30 -9.74 -0.05 -11.03 16 9 C 0.00 -0.01 6.31 -83.57 -0.53 -0.54 16 10 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 11 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 12 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 13 C -0.46 -12.27 9.03 -37.85 -0.34 -12.61 16 14 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 15 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -20.92 10.60 55.55 0.59 -20.34 16 17 Si 0.92 18.90 29.56 -169.99 -5.03 13.88 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 22 C -0.08 -2.00 8.61 -39.79 -0.34 -2.35 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.61 7.13 -51.93 -0.37 0.24 16 26 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.25 9.07 97.61 0.89 2.14 16 29 H 0.40 5.35 8.81 -40.82 -0.36 4.99 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 32 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 33 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 34 H 0.10 2.50 6.22 -52.48 -0.33 2.17 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -29.43 302.29 -8.37 -37.80 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -2.99 Total: 10.33 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.94 Total: -18.99 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.54 Total: -31.37 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.58 Total: -5.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.43 -8.37 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393369533.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.625 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds