Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 103.00006 * 2 1 4 4 C 1.39084 * 120.01068 * 359.97438 * 3 2 1 5 5 C 1.38177 * 120.21518 * 180.02562 * 4 3 2 6 6 C 1.38042 * 120.23512 * 0.02562 * 5 4 3 7 7 C 1.39590 * 120.01446 * 359.97438 * 6 5 4 8 8 C 1.47869 * 120.10484 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99807 * 320.82188 * 8 7 6 10 10 N 1.34770 * 119.99684 * 140.82448 * 8 7 6 11 11 C 1.46496 * 120.00391 * 4.84858 * 10 8 7 12 12 C 1.46503 * 119.99764 * 184.84467 * 10 8 7 13 13 C 1.50699 * 109.47165 * 90.00071 * 12 10 8 14 14 H 1.08000 * 120.00109 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99998 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47431 * 60.00036 * 17 15 13 19 19 H 1.48500 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47083 * 299.99747 * 17 15 13 21 21 C 1.38711 * 120.01253 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47021 * 299.99923 * 1 2 3 24 24 H 1.09001 * 109.46928 * 59.99672 * 1 2 3 25 25 H 1.07999 * 119.88992 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.88234 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.99084 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.47373 * 85.56608 * 11 10 8 29 29 H 1.09004 * 109.47391 * 205.56724 * 11 10 8 30 30 H 1.09001 * 109.46783 * 325.56305 * 11 10 8 31 31 H 1.09004 * 109.47285 * 210.00380 * 12 10 8 32 32 H 1.09009 * 109.47086 * 330.00119 * 12 10 8 33 33 H 0.96992 * 120.00044 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.10941 * 0.25745 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1933 2.6656 -0.0005 5 6 1.4994 4.0130 -0.0011 6 6 2.8163 4.4267 -0.0016 7 6 3.8447 3.4829 -0.0011 8 6 5.2562 3.9238 -0.0011 9 8 5.5930 4.8836 -0.6664 10 7 6.1690 3.2614 0.7366 11 6 5.7865 2.0427 1.4540 12 6 7.5440 3.7600 0.8211 13 6 7.6633 4.7097 1.9851 14 1 6.8013 4.9205 2.6007 15 6 8.8732 5.3088 2.2648 16 7 9.9231 5.0518 1.5156 17 14 9.0212 6.4854 3.7081 18 1 8.6743 5.7740 4.9645 19 1 10.4149 6.9910 3.7937 20 1 8.0921 7.6273 3.5131 21 6 3.5368 2.1227 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.1611 2.3480 -0.0005 26 1 0.7054 4.7452 -0.0019 27 1 3.0510 5.4810 -0.0016 28 1 5.8715 1.1858 0.7856 29 1 6.4465 1.9026 2.3101 30 1 4.7568 2.1329 1.8000 31 1 8.2262 2.9221 0.9644 32 1 7.7985 4.2821 -0.1014 33 1 10.7741 5.4735 1.7121 34 1 4.3282 1.3878 -0.0032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449104860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -1.282148 kcal Electronic energy + Delta-G solvation = -17376.841560 eV Core-core repulsion = 14594.313538 eV Total energy + Delta-G solvation = -2782.528023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86334 -37.85925 -34.94341 -32.76034 -31.43756 -31.06464 -29.17863 -27.70668 -26.05560 -23.93135 -22.73690 -22.12105 -19.38364 -17.27227 -16.54263 -16.43231 -16.24057 -15.43365 -14.97183 -14.55740 -14.33977 -14.16138 -14.05901 -13.64227 -13.05395 -12.85988 -12.69721 -12.39533 -12.11134 -11.98132 -11.55671 -11.32076 -11.15109 -10.91272 -10.56917 -10.37509 -10.17383 -9.82316 -9.67148 -9.13223 -8.84737 -8.43524 -7.69753 -7.52668 -6.04738 -4.10056 0.99589 1.23310 1.32751 2.20783 3.23446 3.32342 3.36550 3.39733 3.75472 4.05235 4.44161 4.71930 4.75337 4.75568 4.81147 5.06509 5.27249 5.29385 5.33128 5.39824 5.61997 5.67902 5.79556 5.91905 6.07823 6.22792 6.31148 6.43977 6.76476 7.04828 7.42457 7.50218 7.91223 8.21609 8.34448 8.86010 9.02014 9.54979 11.03356 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032722 B = 0.004457 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.486893 B = 6280.501799 C = 6555.089614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.119 6.119 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.072 4.072 7 C -0.094 4.094 8 C 0.546 3.454 9 O -0.534 6.534 10 N -0.592 5.592 11 C 0.077 3.923 12 C 0.244 3.756 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.076 4.076 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.122 -9.904 -1.532 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.122 5.878 3 C -0.208 4.208 4 C -0.146 4.146 5 C -0.128 4.128 6 C -0.093 4.093 7 C -0.099 4.099 8 C 0.332 3.668 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.067 4.067 12 C 0.125 3.875 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.100 4.100 22 H 0.125 0.875 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.153 0.847 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.050 -10.433 -1.893 20.934 hybrid contribution -0.723 1.711 0.895 2.062 sum -18.774 -8.722 -0.998 20.725 Atomic orbital electron populations 1.23658 0.95061 1.06966 1.05606 1.85523 1.06070 1.03143 1.93034 1.21576 0.96392 0.96434 1.06360 1.21217 0.97969 0.93251 1.02185 1.20977 0.96371 0.95208 1.00244 1.21296 0.91536 1.00085 0.96409 1.20215 0.94874 0.93255 1.01603 1.18142 0.84473 0.83402 0.80795 1.90758 1.80393 1.27554 1.42522 1.48088 1.12881 1.25120 1.46212 1.21983 1.01009 0.86635 0.97066 1.19368 0.74721 0.94854 0.98551 1.21397 0.95783 1.26588 1.13089 0.92437 1.24933 0.95563 0.96643 0.96878 1.69924 1.00868 1.43706 1.38789 0.86542 0.77099 0.81281 0.82421 1.20207 1.21124 1.20157 1.21306 0.94828 0.95482 0.98341 0.87493 0.89761 0.89804 0.85873 0.85257 0.84738 0.93449 0.90472 0.91839 0.94694 0.93512 0.92600 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.15 101.05 0.92 -0.02 16 2 S -0.12 -1.24 22.56 -107.50 -2.43 -3.67 16 3 C -0.10 -1.20 6.11 -39.09 -0.24 -1.44 16 4 C -0.12 -1.37 9.36 -39.29 -0.37 -1.74 16 5 C -0.11 -1.29 10.02 -39.68 -0.40 -1.69 16 6 C -0.07 -1.10 9.63 -39.15 -0.38 -1.48 16 7 C -0.09 -1.64 5.24 -104.99 -0.55 -2.19 16 8 C 0.55 12.08 7.35 -12.32 -0.09 11.99 16 9 O -0.53 -13.98 16.46 5.32 0.09 -13.90 16 10 N -0.59 -13.08 2.86 -184.06 -0.53 -13.61 16 11 C 0.08 1.30 8.88 59.84 0.53 1.83 16 12 C 0.24 6.49 5.18 -5.19 -0.03 6.47 16 13 C -0.53 -15.18 9.39 -34.44 -0.32 -15.51 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.08 -1.12 7.29 -38.95 -0.28 -1.41 16 22 H 0.11 0.53 8.14 -51.92 -0.42 0.10 16 23 H 0.08 0.49 7.74 -51.92 -0.40 0.09 16 24 H 0.08 0.49 7.74 -51.92 -0.40 0.09 16 25 H 0.12 1.02 5.86 -52.49 -0.31 0.72 16 26 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.13 2.08 8.05 -52.48 -0.42 1.66 16 28 H 0.05 0.68 6.89 -51.93 -0.36 0.33 16 29 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 30 H 0.06 0.97 5.81 -51.93 -0.30 0.67 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.40 7.36 -51.92 -0.38 1.01 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.14 2.00 5.31 -52.48 -0.28 1.72 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -33.26 302.27 -7.97 -41.23 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.08 Total: -2.07 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.30 Total: -3.50 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.21 Total: -39.57 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.43 Total: -3.67 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.26 -7.97 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449104860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.952 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds