Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 103.00006 * 2 1 4 4 C 1.39084 * 120.01068 * 359.97438 * 3 2 1 5 5 C 1.38177 * 120.21518 * 180.02562 * 4 3 2 6 6 C 1.38042 * 120.23512 * 0.02562 * 5 4 3 7 7 C 1.39590 * 120.01446 * 359.97438 * 6 5 4 8 8 C 1.47869 * 120.10484 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99807 * 320.82188 * 8 7 6 10 10 N 1.34770 * 119.99684 * 140.82448 * 8 7 6 11 11 C 1.46496 * 120.00391 * 4.84858 * 10 8 7 12 12 C 1.46503 * 119.99764 * 184.84467 * 10 8 7 13 13 C 1.50699 * 109.47165 * 90.00071 * 12 10 8 14 14 H 1.08000 * 120.00109 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99998 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47431 * 60.00036 * 17 15 13 19 19 H 1.48500 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47083 * 299.99747 * 17 15 13 21 21 C 1.38711 * 120.01253 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47021 * 299.99923 * 1 2 3 24 24 H 1.09001 * 109.46928 * 59.99672 * 1 2 3 25 25 H 1.07999 * 119.88992 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.88234 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.99084 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.47373 * 85.56608 * 11 10 8 29 29 H 1.09004 * 109.47391 * 205.56724 * 11 10 8 30 30 H 1.09001 * 109.46783 * 325.56305 * 11 10 8 31 31 H 1.09004 * 109.47285 * 210.00380 * 12 10 8 32 32 H 1.09009 * 109.47086 * 330.00119 * 12 10 8 33 33 H 0.96992 * 120.00044 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.10941 * 0.25745 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1933 2.6656 -0.0005 5 6 1.4994 4.0130 -0.0011 6 6 2.8163 4.4267 -0.0016 7 6 3.8447 3.4829 -0.0011 8 6 5.2562 3.9238 -0.0011 9 8 5.5930 4.8836 -0.6664 10 7 6.1690 3.2614 0.7366 11 6 5.7865 2.0427 1.4540 12 6 7.5440 3.7600 0.8211 13 6 7.6633 4.7097 1.9851 14 1 6.8013 4.9205 2.6007 15 6 8.8732 5.3088 2.2648 16 7 9.9231 5.0518 1.5156 17 14 9.0212 6.4854 3.7081 18 1 8.6743 5.7740 4.9645 19 1 10.4149 6.9910 3.7937 20 1 8.0921 7.6273 3.5131 21 6 3.5368 2.1227 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.1611 2.3480 -0.0005 26 1 0.7054 4.7452 -0.0019 27 1 3.0510 5.4810 -0.0016 28 1 5.8715 1.1858 0.7856 29 1 6.4465 1.9026 2.3101 30 1 4.7568 2.1329 1.8000 31 1 8.2262 2.9221 0.9644 32 1 7.7985 4.2821 -0.1014 33 1 10.7741 5.4735 1.7121 34 1 4.3282 1.3878 -0.0032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449104860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -22.177962 kcal Electronic energy + Delta-G solvation = -17377.747671 eV Core-core repulsion = 14594.313538 eV Total energy + Delta-G solvation = -2783.434133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30606 -39.23761 -36.77984 -34.84421 -32.66621 -32.15028 -29.93479 -29.45818 -27.64915 -25.69307 -23.78982 -23.66745 -20.86691 -18.75065 -18.58025 -17.72941 -17.35726 -17.01515 -16.51222 -16.17629 -15.67630 -15.30373 -14.74666 -14.69122 -14.53959 -14.28519 -13.91785 -13.70447 -13.53477 -13.42215 -13.10580 -12.89767 -12.64092 -12.55440 -12.38176 -12.21514 -11.77938 -11.14958 -10.89176 -10.77482 -10.66772 -10.00398 -9.54203 -8.37787 -8.25160 -6.41021 -0.13489 0.19063 0.54656 1.35889 1.40457 1.47940 1.50877 1.75291 2.21232 2.39947 2.69108 3.04283 3.49230 3.80790 4.01622 4.16463 4.28096 4.33490 4.34538 4.41199 4.51891 4.57912 4.76343 4.85742 4.91262 4.95214 5.06297 5.16704 5.25681 5.38489 5.49414 5.73192 5.77466 6.00788 6.58624 6.67615 7.18391 7.34002 8.82240 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032722 B = 0.004457 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.486893 B = 6280.501799 C = 6555.089614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.140 6.140 3 C -0.096 4.096 4 C -0.108 4.108 5 C -0.095 4.095 6 C -0.091 4.091 7 C -0.119 4.119 8 C 0.538 3.462 9 O -0.592 6.592 10 N -0.599 5.599 11 C 0.077 3.923 12 C 0.258 3.742 13 C -0.549 4.549 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.081 4.081 22 H 0.126 0.874 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.166 0.834 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.001 0.999 33 H 0.269 0.731 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 -11.073 -0.241 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.102 5.898 3 C -0.208 4.208 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.124 4.124 8 C 0.327 3.673 9 O -0.475 6.475 10 N -0.329 5.329 11 C -0.065 4.065 12 C 0.137 3.863 13 C -0.588 4.588 14 H 0.071 0.929 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.105 4.105 22 H 0.144 0.856 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.181 0.819 26 H 0.184 0.816 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.465 -11.662 -0.582 24.436 hybrid contribution 0.192 1.950 0.433 2.007 sum -21.273 -9.712 -0.150 23.386 Atomic orbital electron populations 1.23833 0.91081 1.08741 1.06903 1.85694 1.10409 1.01140 1.92579 1.21790 0.95694 0.98320 1.04995 1.21709 0.99526 0.92479 0.99423 1.21320 0.95352 0.96579 0.98191 1.21353 0.92897 0.99178 0.97807 1.19806 0.91868 0.95065 1.05661 1.18978 0.86464 0.82404 0.79418 1.90698 1.81768 1.30175 1.44819 1.48086 1.11350 1.26654 1.46803 1.22216 1.01951 0.85234 0.97136 1.18867 0.77459 0.94075 0.95933 1.21649 0.95988 1.27502 1.13625 0.92866 1.25884 0.95026 0.98249 0.99833 1.70045 1.01450 1.44699 1.40443 0.85425 0.77371 0.78659 0.79113 1.18400 1.20075 1.20220 1.21237 0.96296 0.94061 0.98915 0.85556 0.88366 0.88491 0.81905 0.81622 0.86188 0.90726 0.90738 0.89809 0.95292 0.98049 0.92218 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.15 113.37 1.04 -0.07 16 2 S -0.14 -2.48 22.56 -56.49 -1.27 -3.75 16 3 C -0.10 -2.15 6.11 22.59 0.14 -2.01 16 4 C -0.11 -1.96 9.36 22.46 0.21 -1.75 16 5 C -0.10 -1.97 10.02 22.21 0.22 -1.75 16 6 C -0.09 -2.77 9.63 22.55 0.22 -2.55 16 7 C -0.12 -4.22 5.24 -20.11 -0.11 -4.33 16 8 C 0.54 25.26 7.35 86.79 0.64 25.90 16 9 O -0.59 -33.47 16.46 -3.87 -0.06 -33.54 16 10 N -0.60 -27.81 2.86 -854.53 -2.44 -30.26 16 11 C 0.08 2.61 8.88 127.77 1.13 3.74 16 12 C 0.26 14.58 5.18 85.63 0.44 15.02 16 13 C -0.55 -32.70 9.39 25.60 0.24 -32.46 16 14 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 17 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C -0.08 -2.33 7.29 22.68 0.17 -2.17 16 22 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.10 0.59 7.74 -2.39 -0.02 0.57 16 24 H 0.10 0.60 7.74 -2.39 -0.02 0.58 16 25 H 0.16 1.69 5.86 -2.91 -0.02 1.67 16 26 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 27 H 0.12 3.89 8.05 -2.91 -0.02 3.87 16 28 H 0.07 2.12 6.89 -2.39 -0.02 2.11 16 29 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 30 H 0.08 2.52 5.81 -2.39 -0.01 2.51 16 31 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 32 H 0.00 0.09 7.36 -2.38 -0.02 0.07 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.14 3.91 5.31 -2.91 -0.02 3.89 16 Total: -1.00 -77.22 302.27 4.44 -72.77 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.11 Total: 5.37 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.80 Total: -1.41 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.16 Total: -86.98 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.06 Total: -33.54 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -1.27 Total: -3.75 kcal Total: -77.22 4.44 -72.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449104860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.597 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds