Wall clock time and date at job start Mon Mar 30 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76204 * 102.99895 * 2 1 4 4 C 1.39089 * 120.00785 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.21299 * 179.97438 * 4 3 2 6 6 C 1.38050 * 120.23512 * 359.73852 * 5 4 3 7 7 C 1.39590 * 120.01201 * 0.50944 * 6 5 4 8 8 C 1.47862 * 120.10748 * 179.76641 * 7 6 5 9 9 O 1.21553 * 120.00088 * 179.72624 * 8 7 6 10 10 N 1.34777 * 119.99564 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72337 * 10 8 7 12 12 H 1.09008 * 109.47120 * 325.00024 * 11 10 8 13 13 C 1.52996 * 109.47130 * 85.00158 * 11 10 8 14 14 C 1.50698 * 109.47013 * 205.00421 * 11 10 8 15 15 H 1.07999 * 120.00181 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00000 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00060 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00038 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47547 * 59.99470 * 18 16 14 20 20 H 1.48505 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46945 * 299.99598 * 18 16 14 22 22 C 1.38701 * 120.00983 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.47208 * 299.99835 * 1 2 3 24 24 H 1.08997 * 109.47119 * 60.00206 * 1 2 3 25 25 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.89451 * 359.94949 * 4 3 2 27 27 H 1.08002 * 119.88630 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.99616 * 180.28173 * 6 5 4 29 29 H 0.97000 * 120.00483 * 359.72769 * 10 8 7 30 30 H 1.09003 * 109.47061 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.47099 * 300.00036 * 13 11 10 32 32 H 1.08994 * 109.47099 * 60.00047 * 13 11 10 33 33 H 0.96996 * 119.99759 * 179.97438 * 17 16 14 34 34 H 1.07998 * 120.11261 * 0.03968 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1933 2.6656 0.0005 5 6 1.4992 4.0130 0.0011 6 6 2.8162 4.4268 0.0065 7 6 3.8447 3.4830 0.0008 8 6 5.2560 3.9238 0.0014 9 8 6.1500 3.1002 0.0014 10 7 5.5512 5.2389 0.0080 11 6 6.9495 5.6757 0.0147 12 1 7.5454 4.9780 0.6033 13 6 7.4788 5.7139 -1.4203 14 6 7.0430 7.0520 0.6215 15 1 6.1500 7.5515 0.9671 16 6 8.2683 7.6739 0.7344 17 7 9.3557 7.0658 0.3131 18 14 8.3842 9.3795 1.4872 19 1 7.8713 9.3418 2.8802 20 1 9.8015 9.8229 1.4927 21 1 7.5718 10.3303 0.6862 22 6 3.5367 2.1227 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.1610 2.3481 0.0001 27 1 0.7053 4.7452 0.0019 28 1 3.0510 5.4809 0.0115 29 1 4.8378 5.8961 0.0084 30 1 8.5194 6.0385 -1.4152 31 1 7.4112 4.7185 -1.8591 32 1 6.8831 6.4116 -2.0087 33 1 10.2177 7.5035 0.3922 34 1 4.3281 1.3878 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449813811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:15 Heat of formation + Delta-G solvation = -17.810759 kcal Electronic energy + Delta-G solvation = -17084.223297 eV Core-core repulsion = 14300.978540 eV Total energy + Delta-G solvation = -2783.244757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.72589 -37.90925 -34.84307 -32.61725 -31.48787 -31.00560 -29.36582 -28.47639 -25.27143 -23.83672 -22.80615 -21.05632 -19.60306 -18.41339 -16.58381 -16.40154 -15.73094 -15.38402 -14.87004 -14.49487 -14.34469 -14.15448 -13.97769 -13.70270 -13.26051 -12.75676 -12.68794 -12.40231 -11.77538 -11.65526 -11.51007 -11.10951 -10.96915 -10.75793 -10.39066 -10.34215 -10.23987 -9.86822 -9.18513 -9.07388 -8.99124 -8.56211 -7.94354 -7.55316 -6.13000 -4.22757 0.88093 1.22045 1.32125 2.21173 3.17770 3.25320 3.30602 3.31687 3.99426 4.10288 4.36019 4.73436 4.75027 4.75846 4.80774 5.14928 5.19120 5.25209 5.31318 5.43835 5.62820 5.83459 6.12411 6.27879 6.36504 6.72203 6.83047 6.96256 7.13787 7.42022 7.54231 7.67923 7.90135 8.13562 8.61565 8.75492 9.05969 9.44542 10.93026 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003842 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.496760 B = 7285.584167 C = 7703.844377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.116 6.116 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.108 4.108 6 C -0.092 4.092 7 C -0.101 4.101 8 C 0.541 3.459 9 O -0.548 6.548 10 N -0.700 5.700 11 C 0.264 3.736 12 H 0.051 0.949 13 C -0.148 4.148 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.045 4.045 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.388 0.612 30 H 0.091 0.909 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 -8.092 -1.228 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.126 5.874 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.106 4.106 8 C 0.326 3.674 9 O -0.427 6.427 10 N -0.347 5.347 11 C 0.162 3.838 12 H 0.069 0.931 13 C -0.206 4.206 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.069 4.069 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.222 0.778 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.125 -9.685 -1.241 19.713 hybrid contribution -1.136 2.426 0.372 2.704 sum -18.261 -7.260 -0.869 19.670 Atomic orbital electron populations 1.23671 0.95171 1.07003 1.05583 1.85617 1.05856 1.03041 1.92897 1.21618 0.96405 0.96577 1.06217 1.21241 0.98008 0.93264 1.01886 1.20965 0.96445 0.95215 1.00168 1.21453 0.92330 0.99683 0.97840 1.20269 0.94403 0.93574 1.02336 1.18182 0.87400 0.83799 0.78044 1.90735 1.48101 1.52805 1.51102 1.46499 1.11652 1.05177 1.71410 1.18798 0.75614 0.95201 0.94144 0.93149 1.22084 1.04132 0.97167 0.97235 1.21169 0.93842 1.00893 1.41536 0.92091 1.24887 0.95438 0.98194 0.95137 1.69894 0.98511 1.37910 1.45706 0.86492 0.77161 0.83647 0.79698 1.20144 1.21101 1.20143 1.20883 0.94405 0.95477 0.96104 0.89775 0.89778 0.87461 0.85790 0.85210 0.84970 0.77807 0.89023 0.96547 0.95405 0.92462 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.15 101.05 0.92 -0.06 16 2 S -0.12 -1.28 22.56 -107.50 -2.43 -3.71 16 3 C -0.10 -1.25 6.11 -39.09 -0.24 -1.49 16 4 C -0.12 -1.32 9.36 -39.29 -0.37 -1.68 16 5 C -0.11 -1.19 10.02 -39.67 -0.40 -1.59 16 6 C -0.09 -1.23 9.54 -39.15 -0.37 -1.60 16 7 C -0.10 -1.69 5.87 -104.99 -0.62 -2.30 16 8 C 0.54 11.42 7.74 -12.32 -0.10 11.32 16 9 O -0.55 -13.64 16.01 5.32 0.09 -13.55 16 10 N -0.70 -14.92 5.02 -55.87 -0.28 -15.20 16 11 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 12 H 0.05 1.49 7.58 -51.92 -0.39 1.10 16 13 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 14 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.04 -0.71 9.34 -38.95 -0.36 -1.07 16 23 H 0.08 0.50 7.74 -51.92 -0.40 0.10 16 24 H 0.08 0.50 7.74 -51.93 -0.40 0.10 16 25 H 0.11 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.12 1.01 5.86 -52.49 -0.31 0.70 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.13 1.56 6.40 -52.49 -0.34 1.23 16 29 H 0.39 7.06 6.57 -40.82 -0.27 6.79 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 2.36 7.65 -52.49 -0.40 1.96 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -31.15 302.87 -8.26 -39.41 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.06 Total: 5.28 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.76 Total: -8.05 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.35 Total: -39.51 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.43 Total: -3.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.15 -8.26 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449813811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.604 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds