Wall clock time and date at job start Mon Mar 30 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76204 * 102.99895 * 2 1 4 4 C 1.39089 * 120.00785 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.21299 * 179.97438 * 4 3 2 6 6 C 1.38050 * 120.23512 * 359.73852 * 5 4 3 7 7 C 1.39590 * 120.01201 * 0.50944 * 6 5 4 8 8 C 1.47862 * 120.10748 * 179.76641 * 7 6 5 9 9 O 1.21553 * 120.00088 * 179.72624 * 8 7 6 10 10 N 1.34777 * 119.99564 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72337 * 10 8 7 12 12 H 1.09008 * 109.47120 * 325.00024 * 11 10 8 13 13 C 1.52996 * 109.47130 * 85.00158 * 11 10 8 14 14 C 1.50698 * 109.47013 * 205.00421 * 11 10 8 15 15 H 1.07999 * 120.00181 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00000 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00060 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00038 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47547 * 59.99470 * 18 16 14 20 20 H 1.48505 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46945 * 299.99598 * 18 16 14 22 22 C 1.38701 * 120.00983 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.47208 * 299.99835 * 1 2 3 24 24 H 1.08997 * 109.47119 * 60.00206 * 1 2 3 25 25 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.89451 * 359.94949 * 4 3 2 27 27 H 1.08002 * 119.88630 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.99616 * 180.28173 * 6 5 4 29 29 H 0.97000 * 120.00483 * 359.72769 * 10 8 7 30 30 H 1.09003 * 109.47061 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.47099 * 300.00036 * 13 11 10 32 32 H 1.08994 * 109.47099 * 60.00047 * 13 11 10 33 33 H 0.96996 * 119.99759 * 179.97438 * 17 16 14 34 34 H 1.07998 * 120.11261 * 0.03968 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1933 2.6656 0.0005 5 6 1.4992 4.0130 0.0011 6 6 2.8162 4.4268 0.0065 7 6 3.8447 3.4830 0.0008 8 6 5.2560 3.9238 0.0014 9 8 6.1500 3.1002 0.0014 10 7 5.5512 5.2389 0.0080 11 6 6.9495 5.6757 0.0147 12 1 7.5454 4.9780 0.6033 13 6 7.4788 5.7139 -1.4203 14 6 7.0430 7.0520 0.6215 15 1 6.1500 7.5515 0.9671 16 6 8.2683 7.6739 0.7344 17 7 9.3557 7.0658 0.3131 18 14 8.3842 9.3795 1.4872 19 1 7.8713 9.3418 2.8802 20 1 9.8015 9.8229 1.4927 21 1 7.5718 10.3303 0.6862 22 6 3.5367 2.1227 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.1610 2.3481 0.0001 27 1 0.7053 4.7452 0.0019 28 1 3.0510 5.4809 0.0115 29 1 4.8378 5.8961 0.0084 30 1 8.5194 6.0385 -1.4152 31 1 7.4112 4.7185 -1.8591 32 1 6.8831 6.4116 -2.0087 33 1 10.2177 7.5035 0.3922 34 1 4.3281 1.3878 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449813811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:15 Heat of formation + Delta-G solvation = -37.550620 kcal Electronic energy + Delta-G solvation = -17085.079282 eV Core-core repulsion = 14300.978540 eV Total energy + Delta-G solvation = -2784.100742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14745 -39.28302 -36.78786 -34.48542 -32.77747 -32.04593 -30.69354 -29.58708 -27.36904 -25.18517 -23.88700 -22.69752 -21.32801 -19.83584 -18.21947 -17.47580 -17.18786 -17.03488 -16.32242 -15.98882 -15.65132 -15.38318 -14.84714 -14.66924 -14.65165 -14.42379 -13.85580 -13.60752 -13.42105 -13.00824 -12.88388 -12.77267 -12.71846 -12.49808 -12.28303 -12.15892 -11.18737 -11.14965 -10.92145 -10.84566 -10.60696 -10.14264 -9.78466 -8.44786 -8.18571 -6.37118 -0.23086 0.18769 0.50730 1.45419 1.48132 1.49050 1.55950 1.85476 2.31062 2.53555 2.78244 3.11937 3.72072 3.83573 4.03406 4.14337 4.30295 4.31617 4.40614 4.54667 4.72173 4.82540 4.88265 4.89054 5.04930 5.10617 5.25821 5.29942 5.39910 5.55328 5.63352 5.75331 5.87721 6.05764 6.69103 6.86195 7.28035 7.44531 8.88000 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003842 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.496760 B = 7285.584167 C = 7703.844377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.160 6.160 3 C -0.098 4.098 4 C -0.105 4.105 5 C -0.094 4.094 6 C -0.091 4.091 7 C -0.126 4.126 8 C 0.537 3.463 9 O -0.600 6.600 10 N -0.694 5.694 11 C 0.269 3.731 12 H -0.002 1.002 13 C -0.134 4.134 14 C -0.550 4.550 15 H 0.077 0.923 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.261 1.261 22 C -0.067 4.067 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.164 0.836 27 H 0.175 0.825 28 H 0.147 0.853 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.009 0.991 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.882 -6.611 -0.981 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.082 5.918 3 C -0.210 4.210 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.325 3.675 9 O -0.483 6.483 10 N -0.342 5.342 11 C 0.166 3.834 12 H 0.016 0.984 13 C -0.193 4.193 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.092 4.092 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.182 0.818 27 H 0.192 0.808 28 H 0.165 0.835 29 H 0.243 0.757 30 H 0.088 0.912 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.393 -8.200 -0.999 22.933 hybrid contribution 0.051 1.829 0.291 1.853 sum -21.342 -6.371 -0.709 22.284 Atomic orbital electron populations 1.23825 0.90411 1.08800 1.07038 1.85846 1.11046 1.02220 1.92683 1.21738 0.95586 0.98085 1.05603 1.21767 0.99220 0.92855 0.99001 1.21446 0.96118 0.96156 0.97627 1.21658 0.92691 0.99647 0.97260 1.19881 0.92161 0.94733 1.06336 1.18918 0.89241 0.83005 0.76317 1.90693 1.50314 1.53973 1.53305 1.46198 1.10418 1.05977 1.71656 1.18417 0.77390 0.94110 0.93461 0.98407 1.21910 1.03053 0.97024 0.97327 1.21506 0.94662 1.00970 1.41657 0.90521 1.25850 0.94955 1.02414 0.95410 1.70055 0.99096 1.39741 1.46771 0.85335 0.77129 0.78526 0.78972 1.19499 1.21222 1.18572 1.20757 0.95502 0.94752 0.98167 0.88243 0.88200 0.85573 0.81835 0.80773 0.83515 0.75746 0.91192 0.97169 0.93770 0.92455 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.15 113.37 1.04 -0.20 16 2 S -0.16 -3.35 22.56 -56.49 -1.27 -4.62 16 3 C -0.10 -2.42 6.11 22.58 0.14 -2.29 16 4 C -0.10 -1.85 9.36 22.46 0.21 -1.64 16 5 C -0.09 -1.63 10.02 22.21 0.22 -1.41 16 6 C -0.09 -2.25 9.54 22.55 0.22 -2.03 16 7 C -0.13 -4.31 5.87 -20.11 -0.12 -4.42 16 8 C 0.54 23.93 7.74 86.79 0.67 24.60 16 9 O -0.60 -32.38 16.01 -3.88 -0.06 -32.44 16 10 N -0.69 -30.44 5.02 -448.95 -2.25 -32.69 16 11 C 0.27 14.47 2.56 44.24 0.11 14.59 16 12 H 0.00 -0.13 7.58 -2.38 -0.02 -0.14 16 13 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 14 C -0.55 -29.43 8.73 25.60 0.22 -29.21 16 15 H 0.08 3.77 7.74 -2.91 -0.02 3.74 16 16 C 0.01 0.75 5.30 84.65 0.45 1.20 16 17 N -0.92 -53.36 11.32 21.45 0.24 -53.11 16 18 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.07 -2.22 9.34 22.68 0.21 -2.01 16 23 H 0.10 0.69 7.74 -2.39 -0.02 0.67 16 24 H 0.10 0.68 7.74 -2.39 -0.02 0.66 16 25 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.16 1.62 5.86 -2.91 -0.02 1.60 16 27 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 28 H 0.15 3.07 6.40 -2.91 -0.02 3.05 16 29 H 0.41 14.60 6.57 -92.71 -0.61 13.99 16 30 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.11 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -72.90 302.87 3.23 -69.67 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.51 Total: 18.47 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.04 Total: -9.21 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.01 Total: -85.80 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.06 Total: -32.44 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.27 Total: -4.62 kcal Total: -72.90 3.23 -69.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449813811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.121 kcal (2) G-P(sol) polarization free energy of solvation -72.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds