Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99524 * 2 1 4 4 C 1.50698 * 109.47006 * 269.99278 * 3 2 1 5 5 H 1.08005 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 60.00310 * 8 6 4 11 11 H 1.48500 * 109.47454 * 300.00304 * 8 6 4 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99988 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00181 * 0.02562 * 12 2 1 15 15 H 1.09001 * 115.55075 * 34.31990 * 14 12 2 16 16 C 1.53005 * 117.49522 * 248.61670 * 14 12 2 17 17 C 1.52998 * 117.49903 * 179.97438 * 14 12 2 18 18 H 1.09004 * 117.50022 * 359.97438 * 17 14 12 19 19 C 1.50701 * 117.50059 * 214.97090 * 17 14 12 20 20 C 1.38424 * 122.53450 * 119.99493 * 19 17 14 21 21 C 1.33393 * 114.91661 * 179.97438 * 20 19 17 22 22 S 1.75879 * 109.59699 * 0.02562 * 21 20 19 23 23 C 1.33386 * 122.54045 * 299.71681 * 19 17 14 24 24 H 1.09005 * 109.46878 * 90.00411 * 1 2 3 25 25 H 1.09003 * 109.47153 * 209.99784 * 1 2 3 26 26 H 1.08995 * 109.47889 * 330.00323 * 1 2 3 27 27 H 1.09001 * 109.47068 * 149.99942 * 3 2 1 28 28 H 1.08993 * 109.47068 * 29.99396 * 3 2 1 29 29 H 0.97001 * 119.99934 * 359.97438 * 7 6 4 30 30 H 1.09008 * 117.49935 * 0.02562 * 16 14 12 31 31 H 1.08997 * 117.49585 * 145.01781 * 16 14 12 32 32 H 1.08003 * 122.54467 * 359.96838 * 20 19 17 33 33 H 1.08004 * 125.19880 * 179.97438 * 21 20 19 34 34 H 1.07996 * 125.20270 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6183 -0.6732 8 14 3.4367 3.4175 -3.4340 9 1 4.1792 4.7036 -3.4340 10 1 2.1390 3.5946 -4.1338 11 1 4.2395 2.3829 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.4472 -2.4735 -0.5543 16 6 1.4604 -3.3312 1.2645 17 6 2.2076 -3.7626 0.0005 18 1 3.2935 -3.6675 0.0001 19 6 1.6577 -4.9381 -0.7656 20 6 2.3389 -5.5252 -1.8179 21 6 1.7124 -6.5559 -2.3877 22 16 0.1744 -6.8309 -1.5800 23 6 0.4804 -5.4948 -0.4777 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5137 27 1 3.1498 1.1386 0.5138 28 1 1.6082 2.0284 0.5137 29 1 3.3913 3.3383 0.2413 30 1 2.0543 -2.9520 2.0963 31 1 0.5712 -3.8975 1.5415 32 1 3.3044 -5.1754 -2.1524 33 1 2.0913 -7.1327 -3.2185 34 1 -0.1844 -5.1730 0.3102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528169782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = 22.166284 kcal Electronic energy + Delta-G solvation = -17290.687580 eV Core-core repulsion = 14509.176358 eV Total energy + Delta-G solvation = -2781.511222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85318 -38.26510 -35.59385 -34.78948 -32.78409 -29.44626 -27.68482 -26.00542 -25.18412 -23.95376 -22.07340 -21.43101 -18.68258 -18.48540 -18.04789 -16.94076 -16.40006 -15.67147 -15.26409 -14.52667 -13.91931 -13.73002 -13.44317 -13.27026 -12.89092 -12.67907 -12.43965 -12.26302 -12.11523 -11.82345 -11.68145 -11.32780 -10.93732 -10.87209 -10.64830 -10.51468 -10.39490 -10.08821 -9.13309 -9.07072 -8.87736 -8.39022 -8.36574 -7.62400 -6.38101 -4.09787 0.86591 1.53283 1.84365 2.48230 3.15625 3.43575 3.47959 3.65181 3.81146 4.10596 4.53624 4.62103 4.83715 4.91844 4.97085 5.13267 5.31449 5.34736 5.39839 5.52244 5.59600 5.67724 5.82091 5.90096 5.98850 6.13659 6.14360 6.27097 6.46646 6.79799 7.11179 7.39497 8.04161 8.27962 8.43617 8.78144 9.00442 9.59803 10.99348 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.004231 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.126563 B = 6616.678055 C = 7064.489897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.595 5.595 3 C 0.235 3.765 4 C -0.606 4.606 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 1.072 2.928 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.534 3.466 13 O -0.541 6.541 14 C -0.168 4.168 15 H 0.120 0.880 16 C -0.146 4.146 17 C -0.070 4.070 18 H 0.128 0.872 19 C -0.061 4.061 20 C -0.122 4.122 21 C -0.211 4.211 22 S 0.082 5.918 23 C -0.215 4.215 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.022 0.978 29 H 0.267 0.733 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -19.269 0.975 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.326 5.326 3 C 0.116 3.884 4 C -0.645 4.645 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.546 5.546 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.320 3.680 13 O -0.419 6.419 14 C -0.190 4.190 15 H 0.138 0.862 16 C -0.184 4.184 17 C -0.091 4.091 18 H 0.146 0.854 19 C -0.073 4.073 20 C -0.152 4.152 21 C -0.347 4.347 22 S 0.345 5.655 23 C -0.351 4.351 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.969 -19.090 -0.150 21.092 hybrid contribution 0.207 -0.156 0.935 0.970 sum -8.762 -19.246 0.785 21.161 Atomic orbital electron populations 1.21620 0.81161 1.01658 1.01230 1.47850 1.06236 1.07214 1.71285 1.19370 0.91992 0.78875 0.98188 1.22249 1.40711 1.09576 0.91934 0.93086 1.25816 0.93280 0.93287 1.06065 1.70806 1.44094 1.39600 1.00089 0.83508 0.76443 0.76290 0.73816 1.20624 1.21445 1.21393 1.19356 0.87365 0.84034 0.77217 1.90659 1.13785 1.87043 1.50407 1.22462 1.01802 0.90804 1.03912 0.86208 1.23054 1.02610 1.01421 0.91305 1.20733 0.99354 0.90543 0.98492 0.85443 1.18259 0.94329 0.97519 0.97209 1.20116 1.02067 0.96394 0.96633 1.25566 0.98738 1.04033 1.06320 1.84166 1.20129 1.32972 1.28192 1.25405 1.01772 1.02022 1.05853 0.93197 0.92250 0.91518 0.94853 0.96028 0.92264 0.87806 0.88053 0.83841 0.81825 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.05 59.85 0.60 2.03 16 2 N -0.59 -13.01 2.86 -182.96 -0.52 -13.53 16 3 C 0.24 6.26 4.52 -5.19 -0.02 6.23 16 4 C -0.61 -17.75 9.39 -34.44 -0.32 -18.07 16 5 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 6 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 7 N -0.91 -28.07 13.65 55.43 0.76 -27.32 16 8 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 11.42 7.46 -10.99 -0.08 11.33 16 13 O -0.54 -13.89 15.84 5.55 0.09 -13.80 16 14 C -0.17 -2.60 4.46 -91.77 -0.41 -3.01 16 15 H 0.12 1.66 7.26 -51.93 -0.38 1.29 16 16 C -0.15 -1.81 9.63 -26.71 -0.26 -2.06 16 17 C -0.07 -0.99 5.66 -91.75 -0.52 -1.51 16 18 H 0.13 2.01 7.67 -51.93 -0.40 1.61 16 19 C -0.06 -0.76 5.52 -106.25 -0.59 -1.34 16 20 C -0.12 -1.44 9.98 -41.21 -0.41 -1.85 16 21 C -0.21 -2.13 11.23 29.04 0.33 -1.80 16 22 S 0.08 0.78 23.34 -107.50 -2.51 -1.73 16 23 C -0.22 -2.29 10.39 29.04 0.30 -1.99 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.76 6.64 -51.93 -0.34 0.42 16 26 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 27 H 0.03 0.98 7.29 -51.93 -0.38 0.60 16 28 H 0.02 0.57 7.76 -51.93 -0.40 0.17 16 29 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 30 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.10 0.96 6.54 -51.93 -0.34 0.62 16 32 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.16 1.43 6.63 -52.49 -0.35 1.08 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -34.30 305.77 -8.33 -42.64 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.19 Total: -0.20 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.48 Total: -11.55 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.23 Total: -40.85 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.30 -8.33 -42.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528169782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.804 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds