Wall clock time and date at job start Mon Mar 30 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47579 * 59.99607 * 8 6 4 10 10 H 1.48496 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46945 * 299.99598 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 H 1.08998 * 115.55111 * 34.55719 * 15 13 12 17 17 C 1.53009 * 117.49751 * 248.88484 * 15 13 12 18 18 C 1.52996 * 59.99988 * 252.50896 * 17 15 13 19 19 H 1.09007 * 117.49961 * 107.48856 * 18 17 15 20 20 C 1.50694 * 117.50158 * 252.50993 * 18 17 15 21 21 C 1.38430 * 122.54116 * 188.62387 * 20 18 17 22 22 C 1.33391 * 114.92242 * 179.97438 * 21 20 18 23 23 S 1.75881 * 109.59236 * 359.97438 * 22 21 20 24 24 C 1.33392 * 122.54161 * 8.33246 * 20 18 17 25 25 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 30 30 H 1.08992 * 117.49639 * 0.02562 * 17 15 13 31 31 H 1.09000 * 117.49411 * 144.99422 * 17 15 13 32 32 H 1.07998 * 122.53882 * 359.95881 * 21 20 18 33 33 H 1.08000 * 125.20287 * 179.97438 * 22 21 20 34 34 H 1.08000 * 125.19694 * 0.02617 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1188 4.0080 10 1 1.8266 -0.4194 5.2205 11 1 1.8276 -2.5195 4.0084 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 1 2.3593 -1.7721 -3.6822 17 6 4.0395 -0.3346 -4.1065 18 6 2.7850 0.0919 -4.8715 19 1 2.5026 1.1438 -4.8285 20 6 2.4933 -0.6069 -6.1744 21 6 1.4922 -0.1903 -7.0349 22 6 1.3664 -0.9185 -8.1454 23 16 2.5601 -2.2102 -8.1419 24 6 3.1839 -1.6703 -6.5886 25 1 -0.3633 0.5140 0.8898 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7089 1.1617 3.4842 29 1 2.2491 -1.6319 -1.1524 30 1 4.5825 0.4363 -3.5600 31 1 4.6540 -1.1208 -4.5452 32 1 0.8606 0.6597 -6.8230 33 1 0.6424 -0.7420 -8.9270 34 1 4.0001 -2.1303 -6.0514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528314400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:19 Heat of formation + Delta-G solvation = 14.132524 kcal Electronic energy + Delta-G solvation = -17060.311817 eV Core-core repulsion = 14278.452225 eV Total energy + Delta-G solvation = -2781.859592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.73828 -38.19150 -35.59449 -34.55387 -32.33484 -29.53904 -28.85062 -25.33636 -25.21968 -23.92506 -21.51597 -20.60649 -19.31192 -18.59970 -18.09364 -17.08890 -15.91590 -15.50721 -15.16311 -14.43820 -14.22184 -13.67936 -13.30584 -13.25779 -12.74222 -12.68499 -12.40072 -12.07417 -11.75426 -11.65129 -11.11806 -10.96576 -10.88961 -10.82405 -10.54971 -10.34095 -10.29756 -10.21889 -9.08652 -9.04913 -8.87292 -8.54587 -8.36696 -7.89605 -6.11868 -4.21265 0.86755 1.53346 1.84690 2.48945 3.21535 3.25911 3.31023 3.32357 4.01855 4.15444 4.36456 4.70472 4.89292 4.95119 5.09883 5.18071 5.20393 5.34901 5.51876 5.60969 5.78252 5.82388 6.07917 6.15249 6.28036 6.47257 6.83715 6.98176 7.16006 7.47283 7.57405 7.70491 7.92356 8.15682 8.68836 8.78824 9.14895 9.46434 10.94151 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043346 B = 0.003510 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.806461 B = 7976.360449 C = 8192.311127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.704 5.704 13 C 0.529 3.471 14 O -0.556 6.556 15 C -0.170 4.170 16 H 0.119 0.881 17 C -0.145 4.145 18 C -0.071 4.071 19 H 0.127 0.873 20 C -0.062 4.062 21 C -0.122 4.122 22 C -0.213 4.213 23 S 0.082 5.918 24 C -0.214 4.214 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -6.060 -18.583 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.314 3.686 14 O -0.435 6.435 15 C -0.192 4.192 16 H 0.137 0.863 17 C -0.183 4.183 18 C -0.092 4.092 19 H 0.145 0.855 20 C -0.074 4.074 21 C -0.152 4.152 22 C -0.348 4.348 23 S 0.345 5.655 24 C -0.350 4.350 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.711 -6.279 -19.450 20.773 hybrid contribution -0.050 0.100 1.869 1.873 sum 3.661 -6.179 -17.581 18.991 Atomic orbital electron populations 1.22079 0.98475 0.99121 1.00899 1.18750 0.91033 0.93977 0.79996 0.93387 1.21190 1.32509 1.13244 0.90346 0.92108 1.24893 0.94812 0.94956 0.99060 1.69896 1.35834 1.22413 1.23993 0.86499 0.79169 0.79585 0.81784 1.20159 1.21123 1.20155 1.46453 1.64690 1.13616 1.10287 1.19455 0.78406 0.86898 0.83858 1.90644 1.51747 1.16091 1.85056 1.22481 1.02197 1.00469 0.94054 0.86325 1.23045 0.89606 1.03499 1.02138 1.20714 1.01931 0.99602 0.86987 0.85464 1.18279 0.96562 0.96161 0.96412 1.20105 0.99443 1.01965 0.93720 1.25563 1.05150 1.00710 1.03359 1.84185 1.30078 1.32088 1.19127 1.25430 1.06723 1.02616 1.00191 0.89145 0.96644 0.95476 0.92513 0.77844 0.87676 0.88106 0.83895 0.81872 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.70 -14.88 5.07 -54.93 -0.28 -15.16 16 13 C 0.53 10.68 7.58 -10.98 -0.08 10.60 16 14 O -0.56 -13.39 15.92 5.55 0.09 -13.30 16 15 C -0.17 -2.52 5.85 -91.77 -0.54 -3.06 16 16 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 17 C -0.15 -1.81 9.63 -26.73 -0.26 -2.07 16 18 C -0.07 -0.97 5.66 -91.78 -0.52 -1.48 16 19 H 0.13 1.92 7.67 -51.92 -0.40 1.52 16 20 C -0.06 -0.74 5.52 -106.25 -0.59 -1.33 16 21 C -0.12 -1.37 9.98 -41.20 -0.41 -1.78 16 22 C -0.21 -2.05 11.23 29.04 0.33 -1.72 16 23 S 0.08 0.76 23.34 -107.50 -2.51 -1.75 16 24 C -0.21 -2.24 10.39 29.04 0.30 -1.94 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 0.98 6.54 -51.93 -0.34 0.64 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.16 1.44 6.63 -52.49 -0.35 1.09 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -30.65 305.96 -8.70 -39.35 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.22 Total: 7.42 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.99 Total: -12.39 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.35 Total: -39.59 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.65 -8.70 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528314400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.478 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds