Wall clock time and date at job start Mon Mar 30 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47391 * 2 1 4 4 H 1.08994 * 109.47036 * 304.58064 * 3 2 1 5 5 C 1.50699 * 109.47219 * 184.57744 * 3 2 1 6 6 H 1.07997 * 120.00297 * 274.68014 * 5 3 2 7 7 C 1.37875 * 119.99894 * 94.68060 * 5 3 2 8 8 N 1.31520 * 120.00225 * 184.42523 * 7 5 3 9 9 Si 1.86800 * 119.99996 * 4.42935 * 7 5 3 10 10 H 1.48506 * 109.47141 * 94.32564 * 9 7 5 11 11 H 1.48497 * 109.47226 * 214.32457 * 9 7 5 12 12 H 1.48498 * 109.47394 * 334.32776 * 9 7 5 13 13 N 1.46500 * 109.46792 * 64.57814 * 3 2 1 14 14 C 1.34776 * 120.00076 * 275.00121 * 13 3 2 15 15 O 1.21788 * 119.99965 * 0.02562 * 14 13 3 16 16 C 1.41474 * 120.00177 * 180.02562 * 14 13 3 17 17 C 1.35651 * 119.99778 * 173.70622 * 16 14 13 18 18 C 1.41580 * 120.00313 * 345.71529 * 17 16 14 19 19 C 1.37038 * 125.47365 * 137.73015 * 18 17 16 20 20 C 1.37443 * 113.22146 * 179.83888 * 19 18 17 21 21 C 1.33853 * 115.12471 * 0.44992 * 20 19 18 22 22 S 1.70610 * 111.01906 * 359.74986 * 21 20 19 23 23 H 1.09003 * 109.47373 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46757 * 59.99758 * 1 2 3 26 26 H 1.08994 * 109.47378 * 120.00068 * 2 1 3 27 27 H 1.08999 * 109.47654 * 240.00120 * 2 1 3 28 28 H 0.96997 * 119.99767 * 179.97438 * 8 7 5 29 29 H 0.96998 * 119.99728 * 95.00346 * 13 3 2 30 30 H 1.07995 * 119.99679 * 353.71063 * 16 14 13 31 31 H 1.08004 * 119.99795 * 165.71820 * 17 16 14 32 32 H 1.07998 * 123.39129 * 359.97438 * 19 18 17 33 33 H 1.08000 * 122.43421 * 180.20517 * 20 19 18 34 34 H 1.08006 * 124.49264 * 179.71581 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9795 -0.8461 5 6 3.5427 1.4440 -0.1134 6 1 4.1513 1.3434 0.7731 7 6 4.1407 1.5737 -1.3489 8 7 5.4485 1.4878 -1.4589 9 14 3.0934 1.8716 -2.8668 10 1 3.0101 3.3304 -3.1322 11 1 3.7086 1.1905 -4.0341 12 1 1.7289 1.3310 -2.6407 13 7 1.6438 2.1005 1.2475 14 6 0.4257 2.6677 1.3528 15 8 -0.3457 2.6328 0.4111 16 6 0.0433 3.3036 2.5573 17 6 -1.1284 3.9841 2.6226 18 6 -1.8198 4.3191 1.4334 19 6 -3.1741 4.2236 1.2470 20 6 -3.5779 4.6188 -0.0059 21 6 -2.5934 5.0147 -0.8217 22 16 -1.0779 4.9173 -0.0442 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 5.8691 1.5787 -2.3282 29 1 2.2581 2.1280 1.9976 30 1 0.6841 3.2473 3.4247 31 1 -1.5338 4.2705 3.5818 32 1 -3.8557 3.8750 2.0088 33 1 -4.6138 4.6068 -0.3112 34 1 -2.7390 5.3507 -1.8378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588459164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:04 Heat of formation + Delta-G solvation = 1.788772 kcal Electronic energy + Delta-G solvation = -18011.054304 eV Core-core repulsion = 15228.659446 eV Total energy + Delta-G solvation = -2782.394858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93808 -38.64957 -37.03787 -34.56956 -34.33432 -33.04160 -29.98510 -29.03672 -25.81459 -24.64632 -23.53328 -21.42437 -20.99276 -20.38723 -19.23254 -18.11777 -17.45732 -16.93772 -16.42847 -16.05388 -15.70188 -15.01201 -14.79021 -14.67268 -14.02433 -13.84113 -13.74073 -13.62883 -13.48727 -13.17206 -12.93046 -12.87035 -12.47889 -12.30112 -11.85785 -11.65688 -11.61639 -11.14257 -10.83879 -10.79090 -10.44038 -9.77846 -9.02497 -8.59896 -8.37904 -6.42690 -0.51670 0.79084 1.11245 1.27241 1.32471 1.36672 1.44541 1.97211 2.27326 2.68528 2.74517 3.11426 4.08763 4.26354 4.27506 4.35950 4.44920 4.58722 4.59955 4.68282 4.78549 4.89315 5.02763 5.12544 5.27620 5.30495 5.30762 5.41362 5.47412 5.54517 5.60100 5.75018 5.88526 6.19617 6.63029 7.07434 7.23854 7.64310 8.77356 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.006726 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.861879 B = 4161.754586 C = 4540.286114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.243 3.757 4 H 0.034 0.966 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.922 3.078 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.252 1.252 13 N -0.702 5.702 14 C 0.514 3.486 15 O -0.564 6.564 16 C -0.230 4.230 17 C 0.018 3.982 18 C -0.200 4.200 19 C -0.117 4.117 20 C -0.156 4.156 21 C -0.278 4.278 22 S 0.210 5.790 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.269 0.731 29 H 0.401 0.599 30 H 0.161 0.839 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.359 6.294 7.738 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.138 3.862 4 H 0.052 0.948 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.747 3.253 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.176 1.176 13 N -0.351 5.351 14 C 0.305 3.695 15 O -0.448 6.448 16 C -0.254 4.254 17 C -0.003 4.003 18 C -0.318 4.318 19 C -0.148 4.148 20 C -0.189 4.189 21 C -0.416 4.416 22 S 0.482 5.518 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.235 0.765 30 H 0.179 0.821 31 H 0.197 0.803 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.227 6.614 6.425 17.801 hybrid contribution -0.897 -0.393 -0.437 1.072 sum -16.124 6.221 5.987 18.290 Atomic orbital electron populations 1.21712 0.95700 0.99816 1.01216 1.21967 0.95044 0.98317 1.00755 1.18875 0.92654 0.90037 0.84588 0.94805 1.21261 0.90546 1.50093 0.94284 0.92855 1.25587 0.95598 0.94073 1.01494 1.69992 1.10532 1.50885 1.25739 0.86106 0.80353 0.78958 0.79925 1.19971 1.20466 1.17624 1.46359 1.15746 1.55935 1.17064 1.17799 0.82039 0.80514 0.89193 1.90920 1.51948 1.60243 1.41640 1.22417 1.00116 1.03747 0.99076 1.21059 0.91389 0.91197 0.96699 1.22746 0.97452 1.12274 0.99308 1.20997 0.93488 1.01719 0.98565 1.20111 1.00914 1.03957 0.93873 1.25488 0.98451 1.11575 1.06046 1.83369 1.07949 1.54820 1.05663 0.92971 0.93064 0.94913 0.92379 0.93619 0.92186 0.76474 0.82128 0.80275 0.81869 0.82931 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.50 71.98 0.61 -4.33 16 2 C -0.12 -5.22 5.59 30.59 0.17 -5.05 16 3 C 0.24 11.32 1.86 44.25 0.08 11.40 16 4 H 0.03 1.73 4.55 -2.39 -0.01 1.72 16 5 C -0.52 -28.36 9.05 25.60 0.23 -28.13 16 6 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 7 C 0.03 1.84 5.47 84.65 0.46 2.30 16 8 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 9 Si 0.92 44.89 27.28 68.60 1.87 46.76 16 10 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.25 -12.09 6.41 99.48 0.64 -11.45 16 13 N -0.70 -27.25 5.01 -455.18 -2.28 -29.53 16 14 C 0.51 18.28 5.57 85.04 0.47 18.75 16 15 O -0.56 -22.82 8.97 -4.63 -0.04 -22.86 16 16 C -0.23 -5.93 9.78 22.47 0.22 -5.71 16 17 C 0.02 0.40 9.87 22.49 0.22 0.62 16 18 C -0.20 -5.47 4.62 22.81 0.11 -5.37 16 19 C -0.12 -2.82 10.25 21.80 0.22 -2.60 16 20 C -0.16 -3.86 10.15 21.08 0.21 -3.65 16 21 C -0.28 -7.68 10.92 66.82 0.73 -6.95 16 22 S 0.21 6.67 19.45 -56.49 -1.10 5.57 16 23 H 0.05 2.01 5.65 -2.39 -0.01 1.99 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.03 1.37 7.82 -2.39 -0.02 1.35 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.40 13.85 8.55 -92.71 -0.79 13.06 16 30 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -66.90 294.57 2.75 -64.15 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.25 Total: 20.36 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 3.75 Total: -28.71 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.98 Total: -85.27 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.87 Total: 46.76 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -1.10 Total: 5.57 kcal Total: -66.90 2.75 -64.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588459164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.939 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds