Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76201 * 102.99918 * 2 1 4 4 C 1.39047 * 120.04617 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.06339 * 179.97438 * 4 3 2 6 6 C 1.38203 * 120.15207 * 359.74684 * 5 4 3 7 7 C 1.38929 * 120.08410 * 0.50699 * 6 5 4 8 8 N 1.39919 * 120.02752 * 179.77110 * 7 6 5 9 9 C 1.34775 * 120.00077 * 214.81713 * 8 7 6 10 10 O 1.21290 * 119.99896 * 355.37627 * 9 8 7 11 11 C 1.50703 * 120.00441 * 175.37583 * 9 8 7 12 12 H 1.08992 * 109.46671 * 60.00015 * 11 9 8 13 13 C 1.52996 * 109.46658 * 300.00064 * 11 9 8 14 14 C 1.50703 * 109.47154 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00075 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99700 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00112 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99832 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47289 * 59.99484 * 18 16 14 20 20 H 1.48494 * 109.46956 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46855 * 299.99320 * 18 16 14 22 22 C 1.38742 * 119.93731 * 359.49229 * 7 6 5 23 23 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46811 * 299.99524 * 1 2 3 25 25 H 1.09002 * 109.47129 * 60.00021 * 1 2 3 26 26 H 1.08007 * 119.97133 * 359.95101 * 4 3 2 27 27 H 1.08005 * 119.92896 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.96106 * 180.28170 * 6 5 4 29 29 H 0.97001 * 120.00722 * 34.82541 * 8 7 6 30 30 H 1.08999 * 109.47138 * 60.00309 * 13 11 9 31 31 H 1.09003 * 109.47016 * 180.02562 * 13 11 9 32 32 H 1.09003 * 109.47788 * 299.99901 * 13 11 9 33 33 H 0.96998 * 119.99657 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.07114 * 180.23265 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1942 2.6660 0.0005 5 6 1.5045 4.0117 0.0011 6 6 2.8249 4.4197 0.0064 7 6 3.8452 3.4767 0.0005 8 7 5.1816 3.8911 0.0010 9 6 6.1083 3.1788 -0.6700 10 8 5.8005 2.1342 -1.2041 11 6 7.5268 3.6801 -0.7568 12 1 7.9415 3.7723 0.2469 13 6 7.5433 5.0474 -1.4431 14 6 8.3554 2.7075 -1.5559 15 1 7.9004 1.8153 -1.9601 16 6 9.6945 2.9561 -1.7700 17 7 10.2486 4.0423 -1.2774 18 14 10.7217 1.7501 -2.7599 19 1 10.1568 1.6247 -4.1275 20 1 12.1194 2.2442 -2.8455 21 1 10.7053 0.4229 -2.0939 22 6 3.5376 2.1238 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.1612 2.3505 0.0002 27 1 0.7134 4.7471 0.0019 28 1 3.0640 5.4728 0.0114 29 1 5.4412 4.6910 0.4844 30 1 6.9439 5.7511 -0.8655 31 1 8.5693 5.4099 -1.5063 32 1 7.1285 4.9553 -2.4469 33 1 11.1907 4.2173 -1.4284 34 1 4.3290 1.3890 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596664720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = -15.671333 kcal Electronic energy + Delta-G solvation = -17303.331102 eV Core-core repulsion = 14520.179118 eV Total energy + Delta-G solvation = -2783.151985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97854 -38.01089 -34.25676 -33.84559 -30.88218 -30.87493 -29.71283 -28.35871 -25.19003 -23.49260 -22.86573 -21.63709 -19.45554 -18.10685 -16.43224 -16.16664 -16.08814 -15.53697 -14.88134 -14.57162 -14.25029 -14.06415 -13.91043 -13.42375 -13.11381 -12.77378 -12.62278 -12.47628 -11.74275 -11.58849 -11.48400 -11.02785 -10.79942 -10.72216 -10.39961 -10.26144 -10.06892 -10.00834 -9.45772 -9.04924 -8.71037 -8.37991 -7.90863 -7.34566 -6.07273 -4.11018 1.29373 1.51285 1.52213 2.42458 3.35337 3.37762 3.42575 3.44117 3.67155 3.95357 4.44706 4.89373 4.90098 4.93536 5.11540 5.26384 5.29317 5.46594 5.62426 5.66729 5.80861 6.11078 6.37656 6.46147 6.52031 6.57793 6.67582 6.75518 6.85960 7.26359 7.39433 7.68730 7.88743 8.03847 8.29562 8.96607 9.01370 9.54818 11.00353 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.004652 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.595765 B = 6017.724277 C = 6881.954950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.114 6.114 3 C -0.067 4.067 4 C -0.163 4.163 5 C -0.084 4.084 6 C -0.160 4.160 7 C 0.181 3.819 8 N -0.688 5.688 9 C 0.518 3.482 10 O -0.520 6.520 11 C 0.032 3.968 12 H 0.057 0.943 13 C -0.134 4.134 14 C -0.504 4.504 15 H 0.075 0.925 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.106 4.106 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.409 0.591 30 H 0.013 0.987 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.629 0.404 4.799 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.128 5.872 3 C -0.180 4.180 4 C -0.188 4.188 5 C -0.104 4.104 6 C -0.183 4.183 7 C 0.083 3.917 8 N -0.334 5.334 9 C 0.309 3.691 10 O -0.394 6.394 11 C 0.011 3.989 12 H 0.074 0.926 13 C -0.192 4.192 14 C -0.543 4.543 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.132 4.132 23 H 0.123 0.877 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.245 0.755 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.918 -1.338 4.376 17.526 hybrid contribution -0.169 1.051 -0.309 1.109 sum -17.087 -0.287 4.067 17.567 Atomic orbital electron populations 1.23653 0.95643 1.06745 1.05440 1.85684 1.05265 1.03601 1.92679 1.21538 0.96248 0.96181 1.04062 1.20989 0.97731 0.93197 1.06879 1.20729 0.95726 0.95079 0.98870 1.20959 0.92185 0.98955 1.06183 1.17797 0.84781 0.92415 0.96667 1.44142 1.05401 1.30732 1.53092 1.22357 0.88564 0.83302 0.74909 1.90550 1.81042 1.22939 1.44831 1.18908 0.85125 0.95506 0.99354 0.92576 1.21767 1.03825 0.95485 0.98097 1.21077 0.93371 1.06835 1.32982 0.90721 1.24937 0.97695 0.95625 0.95838 1.69854 1.12495 1.25517 1.45669 0.86481 0.78650 0.81244 0.80650 1.20148 1.21330 1.20110 1.20966 0.94947 0.95607 1.01631 0.87660 0.89940 0.89885 0.86285 0.85759 0.85602 0.75524 0.96812 0.88592 0.94857 0.92808 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.15 101.05 0.92 -0.34 16 2 S -0.11 -1.55 22.56 -107.50 -2.43 -3.98 16 3 C -0.07 -1.03 6.11 -39.07 -0.24 -1.27 16 4 C -0.16 -2.09 9.36 -39.33 -0.37 -2.46 16 5 C -0.08 -1.01 10.03 -39.64 -0.40 -1.41 16 6 C -0.16 -2.18 9.96 -39.34 -0.39 -2.57 16 7 C 0.18 3.07 6.30 -83.72 -0.53 2.55 16 8 N -0.69 -12.20 5.19 -9.88 -0.05 -12.26 16 9 C 0.52 11.66 6.99 -10.98 -0.08 11.58 16 10 O -0.52 -13.32 12.89 5.55 0.07 -13.25 16 11 C 0.03 0.78 2.64 -92.92 -0.24 0.54 16 12 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 13 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 14 C -0.50 -14.12 8.37 -34.44 -0.29 -14.40 16 15 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.90 -24.81 11.32 55.43 0.63 -24.18 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.11 -1.92 8.44 -39.18 -0.33 -2.25 16 23 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 25 H 0.08 0.66 7.75 -51.92 -0.40 0.26 16 26 H 0.12 1.20 5.87 -52.48 -0.31 0.89 16 27 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.41 5.98 8.39 -40.82 -0.34 5.63 16 30 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16 31 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.15 3.06 6.22 -52.49 -0.33 2.73 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -30.98 299.67 -8.09 -39.06 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.10 Total: 4.53 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.70 Total: -11.15 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.58 Total: -36.44 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.43 Total: -3.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.98 -8.09 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596664720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.392 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds