Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76204 * 102.99802 * 2 1 4 4 C 1.38953 * 120.00731 * 180.02562 * 3 2 1 5 5 C 1.38037 * 119.98754 * 180.02562 * 4 3 2 6 6 C 1.38867 * 120.01353 * 0.24986 * 5 4 3 7 7 N 1.40146 * 119.99550 * 179.74304 * 6 5 4 8 8 C 1.34783 * 119.99739 * 33.31625 * 7 6 5 9 9 O 1.21299 * 119.99524 * 5.26361 * 8 7 6 10 10 C 1.50690 * 120.00245 * 185.26832 * 8 7 6 11 11 H 1.09003 * 109.47502 * 59.99990 * 10 8 7 12 12 C 1.52997 * 109.47206 * 300.00145 * 10 8 7 13 13 C 1.50699 * 109.47377 * 179.97438 * 10 8 7 14 14 H 1.07999 * 119.99814 * 0.02562 * 13 10 8 15 15 C 1.37881 * 120.00316 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99773 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00121 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47201 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47293 * 119.99865 * 17 15 13 20 20 H 1.48501 * 109.47016 * 239.99892 * 17 15 13 21 21 C 1.38868 * 120.01629 * 359.49751 * 6 5 4 22 22 C 1.38044 * 120.01159 * 0.50594 * 21 6 5 23 23 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46942 * 300.00061 * 1 2 3 25 25 H 1.09000 * 109.47198 * 59.99373 * 1 2 3 26 26 H 1.07994 * 120.00436 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.99667 * 179.97438 * 5 4 3 28 28 H 0.96995 * 120.00617 * 213.31498 * 7 6 5 29 29 H 1.09003 * 109.46823 * 299.99744 * 12 10 8 30 30 H 1.08989 * 109.47378 * 59.99685 * 12 10 8 31 31 H 1.08997 * 109.47248 * 180.02562 * 12 10 8 32 32 H 0.97001 * 119.99750 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.99482 * 180.24975 * 21 6 5 34 34 H 1.07999 * 120.00688 * 179.72194 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5391 2.1234 -0.0005 5 6 3.8491 3.4685 0.0000 6 6 2.8334 4.4154 0.0063 7 7 3.1486 5.7809 0.0123 8 6 4.2495 6.2212 -0.6287 9 8 4.9146 5.4519 -1.2898 10 6 4.6539 7.6690 -0.5239 11 1 4.8394 7.9199 0.5205 12 6 3.5305 8.5532 -1.0689 13 6 5.9090 7.8993 -1.3257 14 1 6.3676 7.0793 -1.8583 15 6 6.4712 9.1571 -1.3803 16 7 5.9124 10.1558 -0.7322 17 14 8.0265 9.4427 -2.3748 18 1 8.4528 8.1670 -3.0042 19 1 7.7602 10.4517 -3.4313 20 1 9.1032 9.9362 -1.4790 21 6 1.5053 4.0096 0.0016 22 6 1.1943 2.6647 0.0011 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.3291 1.3870 -0.0014 27 1 4.8818 3.7846 0.0000 28 1 2.5746 6.4092 0.4777 29 1 3.3451 8.3024 -2.1134 30 1 2.6231 8.3866 -0.4887 31 1 3.8233 9.6004 -0.9936 32 1 6.3078 11.0407 -0.7709 33 1 0.7157 4.7464 0.0024 34 1 0.1614 2.3492 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596679778.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = -35.077995 kcal Electronic energy + Delta-G solvation = -17173.106950 eV Core-core repulsion = 14389.113430 eV Total energy + Delta-G solvation = -2783.993521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44128 -39.43402 -35.85099 -35.70969 -32.72853 -32.18858 -30.57165 -29.48350 -27.23379 -25.21196 -23.84833 -23.16857 -21.06130 -19.06121 -18.58200 -18.14642 -17.60592 -16.63554 -16.23676 -15.80617 -15.67680 -15.37054 -14.94172 -14.67954 -14.56342 -14.42232 -13.87612 -13.61376 -13.45594 -13.00808 -12.92800 -12.69666 -12.61767 -12.42462 -12.24391 -12.05581 -11.63687 -11.18278 -11.06354 -10.65768 -10.39264 -10.00789 -9.82796 -8.18325 -8.17703 -6.28433 0.11111 0.34592 0.61136 1.38469 1.40996 1.53437 1.54056 1.77765 2.20315 2.46022 2.72713 3.12124 3.80959 3.92030 4.18071 4.32326 4.32605 4.33403 4.46237 4.57731 4.71665 4.87839 4.90326 4.94589 4.98261 5.03497 5.24981 5.33802 5.46519 5.49006 5.72006 5.89130 5.98088 6.17056 6.60470 6.80675 7.31445 7.42873 8.87959 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.047285 B = 0.003794 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.013358 B = 7378.429141 C = 7825.071734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.152 6.152 3 C -0.112 4.112 4 C -0.089 4.089 5 C -0.129 4.129 6 C 0.135 3.865 7 N -0.670 5.670 8 C 0.521 3.479 9 O -0.562 6.562 10 C 0.027 3.973 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.531 4.531 14 H 0.049 0.951 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.274 1.274 21 C -0.126 4.126 22 C -0.107 4.107 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.423 0.577 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.266 0.734 33 H 0.158 0.842 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -14.639 4.371 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.089 5.911 3 C -0.225 4.225 4 C -0.113 4.113 5 C -0.152 4.152 6 C 0.038 3.962 7 N -0.316 5.316 8 C 0.312 3.688 9 O -0.439 6.439 10 C 0.006 3.994 11 H 0.065 0.935 12 C -0.181 4.181 13 C -0.569 4.569 14 H 0.067 0.933 15 C -0.178 4.178 16 N -0.549 5.549 17 Si 0.781 3.219 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.148 4.148 22 C -0.131 4.131 23 H 0.144 0.856 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.262 0.738 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.691 -15.976 3.943 21.406 hybrid contribution 0.300 1.829 -0.323 1.881 sum -13.391 -14.147 3.619 19.813 Atomic orbital electron populations 1.23788 0.91195 1.08592 1.06715 1.85513 1.10370 1.02210 1.93055 1.21751 0.96203 0.97631 1.06886 1.20685 0.95469 0.94794 1.00367 1.21061 0.99217 0.92893 1.01985 1.18171 0.94230 0.83708 1.00049 1.43770 1.27503 1.06530 1.53842 1.21852 0.78633 0.92100 0.76201 1.90542 1.53703 1.58703 1.40926 1.18832 0.96015 0.86018 0.98523 0.93469 1.21597 0.95482 1.02705 0.98293 1.21305 1.09547 0.95149 1.30931 0.93276 1.25565 1.00144 0.95576 0.96486 1.69942 1.40790 1.01123 1.43006 0.85553 0.79812 0.77759 0.78826 1.20540 1.19876 1.19967 1.21102 0.93905 0.97060 1.02703 1.21286 0.99352 0.91633 1.00788 0.85581 0.88465 0.88837 0.85065 0.87224 0.73847 0.95713 0.92510 0.90831 0.92508 0.82394 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.15 113.37 1.04 -0.37 16 2 S -0.15 -3.05 22.56 -56.49 -1.27 -4.32 16 3 C -0.11 -2.81 6.11 22.61 0.14 -2.67 16 4 C -0.09 -2.70 9.78 22.39 0.22 -2.48 16 5 C -0.13 -4.61 8.65 22.37 0.19 -4.41 16 6 C 0.14 4.39 6.28 38.11 0.24 4.63 16 7 N -0.67 -23.07 5.27 -303.33 -1.60 -24.67 16 8 C 0.52 23.72 6.89 87.65 0.60 24.33 16 9 O -0.56 -29.68 13.15 -3.09 -0.04 -29.72 16 10 C 0.03 1.34 2.65 -12.29 -0.03 1.31 16 11 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.12 -5.40 8.86 71.98 0.64 -4.76 16 13 C -0.53 -30.45 8.38 25.60 0.21 -30.24 16 14 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 15 C 0.02 1.20 5.30 84.66 0.45 1.65 16 16 N -0.91 -50.32 11.32 21.45 0.24 -50.08 16 17 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 C -0.13 -3.04 9.95 22.37 0.22 -2.82 16 22 C -0.11 -2.29 9.36 22.39 0.21 -2.08 16 23 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.81 7.74 -2.39 -0.02 0.79 16 25 H 0.09 0.85 7.75 -2.39 -0.02 0.83 16 26 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 27 H 0.11 4.56 6.41 -2.91 -0.02 4.54 16 28 H 0.42 11.52 8.09 -92.71 -0.75 10.77 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.94 7.45 -2.39 -0.02 1.92 16 31 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.16 2.22 5.87 -2.91 -0.02 2.20 16 Total: -1.00 -68.35 299.51 3.86 -64.49 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.37 Total: 15.47 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.13 Total: -17.91 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.36 Total: -74.75 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.72 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.27 Total: -4.32 kcal Total: -68.35 3.86 -64.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679778.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.417 kcal (2) G-P(sol) polarization free energy of solvation -68.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds