Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76192 * 102.99951 * 2 1 4 4 C 1.38792 * 120.10581 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98749 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.20056 * 359.73388 * 5 4 3 7 7 C 1.38247 * 120.21192 * 0.54070 * 6 5 4 8 8 C 1.38652 * 120.00697 * 359.45704 * 7 6 5 9 9 N 1.40139 * 120.10253 * 180.29227 * 8 7 6 10 10 C 1.34777 * 119.99474 * 24.81957 * 9 8 7 11 11 O 1.21298 * 120.00418 * 5.52414 * 10 9 8 12 12 C 1.50706 * 119.99523 * 185.53119 * 10 9 8 13 13 H 1.08994 * 109.47185 * 299.99398 * 12 10 9 14 14 C 1.52999 * 109.47264 * 60.00050 * 12 10 9 15 15 C 1.50701 * 109.46717 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00360 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99960 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99813 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00256 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46928 * 59.99951 * 19 17 15 21 21 H 1.48499 * 109.47095 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47188 * 300.00395 * 19 17 15 23 23 H 1.09001 * 109.47045 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47024 * 299.99360 * 1 2 3 25 25 H 1.08998 * 109.47195 * 60.00076 * 1 2 3 26 26 H 1.07997 * 120.00250 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.89726 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.89186 * 180.27417 * 6 5 4 29 29 H 1.07990 * 119.99756 * 179.72739 * 7 6 5 30 30 H 0.96997 * 120.00423 * 204.81180 * 9 8 7 31 31 H 1.08994 * 109.47551 * 59.99572 * 14 12 10 32 32 H 1.09001 * 109.46747 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.46840 * 299.99760 * 14 12 10 34 34 H 0.97002 * 120.00068 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6652 -0.0005 5 6 1.5107 4.0111 -0.0011 6 6 2.8327 4.4174 0.0045 7 6 3.8486 3.4798 -0.0007 8 6 3.5439 2.1272 -0.0001 9 7 4.5721 1.1750 0.0009 10 6 5.7861 1.4949 0.4912 11 8 5.9614 2.5712 1.0224 12 6 6.9259 0.5152 0.3793 13 1 6.6657 -0.4059 0.9007 14 6 7.1921 0.2087 -1.0958 15 6 8.1633 1.1115 0.9992 16 1 8.1281 2.1009 1.4306 17 6 9.3405 0.3938 1.0156 18 7 9.3832 -0.8113 0.4907 19 14 10.8746 1.1331 1.7833 20 1 10.6168 1.4321 3.2149 21 1 11.9973 0.1673 1.6743 22 1 11.2290 2.3874 1.0717 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 0.1637 2.3514 -0.0005 27 1 0.7210 4.7479 -0.0019 28 1 3.0721 5.4705 0.0085 29 1 4.8797 3.8009 -0.0008 30 1 4.4102 0.2858 -0.3512 31 1 7.4522 1.1299 -1.6172 32 1 8.0167 -0.4994 -1.1767 33 1 6.2971 -0.2223 -1.5445 34 1 10.2113 -1.3164 0.5026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596700920.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -13.699278 kcal Electronic energy + Delta-G solvation = -17506.009737 eV Core-core repulsion = 14722.943267 eV Total energy + Delta-G solvation = -2783.066470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01284 -38.00518 -34.26340 -33.84679 -31.20190 -30.77220 -28.98453 -28.85367 -25.18242 -23.48943 -22.87967 -21.63190 -19.38631 -17.98513 -16.88524 -16.19436 -15.99849 -15.20007 -14.97462 -14.52237 -14.26811 -13.93046 -13.89260 -13.65860 -13.05561 -12.84799 -12.57503 -12.45301 -11.89445 -11.63543 -11.23387 -11.00669 -10.79088 -10.71992 -10.40392 -10.26629 -10.03797 -10.00283 -9.58492 -9.04509 -8.69207 -8.38374 -8.03998 -7.18630 -6.06230 -4.10319 1.32354 1.47568 1.52700 2.38305 3.35175 3.37894 3.42153 3.43820 3.67355 4.00135 4.44751 4.88305 4.88753 4.89141 5.13283 5.27044 5.32735 5.45109 5.60409 5.67198 5.85259 6.15046 6.33359 6.42930 6.59456 6.65720 6.76539 6.80205 6.86930 7.26048 7.40968 7.69500 7.88702 8.04321 8.29066 8.95172 8.99574 9.55194 11.01360 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.005061 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.991716 B = 5531.292021 C = 6244.492796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.122 6.122 3 C -0.133 4.133 4 C -0.113 4.113 5 C -0.137 4.137 6 C -0.100 4.100 7 C -0.122 4.122 8 C 0.191 3.809 9 N -0.680 5.680 10 C 0.520 3.480 11 O -0.520 6.520 12 C 0.032 3.968 13 H 0.057 0.943 14 C -0.134 4.134 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.409 0.591 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.013 0.987 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.261 2.717 -3.471 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.119 5.881 3 C -0.248 4.248 4 C -0.137 4.137 5 C -0.158 4.158 6 C -0.121 4.121 7 C -0.144 4.144 8 C 0.089 3.911 9 N -0.324 5.324 10 C 0.312 3.688 11 O -0.394 6.394 12 C 0.011 3.989 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.543 4.543 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.245 0.755 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.032 0.968 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.230 2.229 -3.111 16.675 hybrid contribution -0.236 0.965 0.216 1.016 sum -16.466 3.194 -2.896 17.021 Atomic orbital electron populations 1.23630 0.95056 1.06837 1.05423 1.85409 1.06166 1.03242 1.93320 1.21384 0.94914 0.96753 1.11726 1.20848 0.97291 0.92979 1.02558 1.20896 0.96551 0.94980 1.03396 1.21102 0.92329 0.99457 0.99180 1.21520 1.01811 0.90554 1.00552 1.17525 0.85902 0.90076 0.97594 1.44253 1.10834 1.15045 1.62272 1.22359 0.82470 0.89526 0.74444 1.90496 1.82553 1.24968 1.41391 1.18919 0.90231 0.93692 0.96103 0.92556 1.21768 1.00858 1.01464 0.95109 1.21059 0.92778 1.03080 1.37375 0.90722 1.24944 0.98999 0.94827 0.95337 1.69860 1.27456 1.10851 1.45226 0.86476 0.81781 0.78793 0.79916 1.20159 1.21330 1.20157 0.87555 0.89878 0.89934 0.86083 0.86164 0.85765 0.82893 0.75452 0.94807 0.88508 0.96773 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.15 101.05 0.92 -0.26 16 2 S -0.12 -1.58 21.27 -107.50 -2.29 -3.87 16 3 C -0.13 -2.00 6.12 -38.90 -0.24 -2.24 16 4 C -0.11 -1.44 9.36 -39.39 -0.37 -1.81 16 5 C -0.14 -1.70 10.04 -39.57 -0.40 -2.10 16 6 C -0.10 -1.41 10.04 -39.56 -0.40 -1.81 16 7 C -0.12 -2.15 8.72 -39.43 -0.34 -2.50 16 8 C 0.19 3.41 6.44 -83.43 -0.54 2.87 16 9 N -0.68 -12.96 5.02 -9.70 -0.05 -13.01 16 10 C 0.52 11.94 6.96 -10.98 -0.08 11.86 16 11 O -0.52 -13.14 12.63 5.54 0.07 -13.07 16 12 C 0.03 0.78 2.64 -92.92 -0.24 0.54 16 13 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 14 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 15 C -0.50 -14.13 8.37 -34.44 -0.29 -14.42 16 16 H 0.07 2.19 6.75 -52.49 -0.35 1.83 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.08 0.64 7.75 -51.92 -0.40 0.24 16 25 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 26 H 0.12 1.20 5.88 -52.49 -0.31 0.89 16 27 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.15 3.03 5.79 -52.49 -0.30 2.73 16 30 H 0.41 7.08 7.24 -40.82 -0.30 6.78 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.01 0.26 7.70 -51.93 -0.40 -0.14 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -30.28 296.90 -7.95 -38.23 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.03 Total: 5.91 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.73 Total: -11.04 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.58 Total: -37.27 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.29 Total: -3.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.28 -7.95 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596700920.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.530 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds