Wall clock time and date at job start Mon Mar 30 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76192 * 102.99951 * 2 1 4 4 C 1.38792 * 120.10581 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98749 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.20056 * 359.73388 * 5 4 3 7 7 C 1.38247 * 120.21192 * 0.54070 * 6 5 4 8 8 C 1.38652 * 120.00697 * 359.45704 * 7 6 5 9 9 N 1.40139 * 120.10253 * 180.29227 * 8 7 6 10 10 C 1.34777 * 119.99474 * 24.81957 * 9 8 7 11 11 O 1.21298 * 120.00418 * 5.52414 * 10 9 8 12 12 C 1.50706 * 119.99523 * 185.53119 * 10 9 8 13 13 H 1.08994 * 109.47185 * 299.99398 * 12 10 9 14 14 C 1.52999 * 109.47264 * 60.00050 * 12 10 9 15 15 C 1.50701 * 109.46717 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00360 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99960 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99813 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00256 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46928 * 59.99951 * 19 17 15 21 21 H 1.48499 * 109.47095 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47188 * 300.00395 * 19 17 15 23 23 H 1.09001 * 109.47045 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47024 * 299.99360 * 1 2 3 25 25 H 1.08998 * 109.47195 * 60.00076 * 1 2 3 26 26 H 1.07997 * 120.00250 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.89726 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.89186 * 180.27417 * 6 5 4 29 29 H 1.07990 * 119.99756 * 179.72739 * 7 6 5 30 30 H 0.96997 * 120.00423 * 204.81180 * 9 8 7 31 31 H 1.08994 * 109.47551 * 59.99572 * 14 12 10 32 32 H 1.09001 * 109.46747 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.46840 * 299.99760 * 14 12 10 34 34 H 0.97002 * 120.00068 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6652 -0.0005 5 6 1.5107 4.0111 -0.0011 6 6 2.8327 4.4174 0.0045 7 6 3.8486 3.4798 -0.0007 8 6 3.5439 2.1272 -0.0001 9 7 4.5721 1.1750 0.0009 10 6 5.7861 1.4949 0.4912 11 8 5.9614 2.5712 1.0224 12 6 6.9259 0.5152 0.3793 13 1 6.6657 -0.4059 0.9007 14 6 7.1921 0.2087 -1.0958 15 6 8.1633 1.1115 0.9992 16 1 8.1281 2.1009 1.4306 17 6 9.3405 0.3938 1.0156 18 7 9.3832 -0.8113 0.4907 19 14 10.8746 1.1331 1.7833 20 1 10.6168 1.4321 3.2149 21 1 11.9973 0.1673 1.6743 22 1 11.2290 2.3874 1.0717 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 0.1637 2.3514 -0.0005 27 1 0.7210 4.7479 -0.0019 28 1 3.0721 5.4705 0.0085 29 1 4.8797 3.8009 -0.0008 30 1 4.4102 0.2858 -0.3512 31 1 7.4522 1.1299 -1.6172 32 1 8.0167 -0.4994 -1.1767 33 1 6.2971 -0.2223 -1.5445 34 1 10.2113 -1.3164 0.5026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596700920.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:49 Heat of formation + Delta-G solvation = -31.669134 kcal Electronic energy + Delta-G solvation = -17506.788969 eV Core-core repulsion = 14722.943267 eV Total energy + Delta-G solvation = -2783.845701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51606 -39.39894 -35.87349 -35.76993 -32.72872 -32.24576 -30.28012 -29.64624 -27.25165 -25.14019 -24.05487 -23.08716 -21.04206 -19.28505 -18.39874 -17.89427 -17.67338 -16.60380 -16.37055 -16.27963 -15.50490 -15.20845 -14.84454 -14.79641 -14.62322 -14.44643 -13.86962 -13.52925 -13.34085 -13.05904 -12.91802 -12.74504 -12.63087 -12.34590 -12.24970 -12.01700 -11.52132 -11.15674 -11.11264 -10.72044 -10.59687 -10.34065 -9.29615 -8.28244 -8.17247 -6.28779 0.17827 0.34352 0.53561 1.41420 1.42994 1.49854 1.51536 1.76851 2.16319 2.45673 2.78355 3.12453 3.83691 4.01400 4.20535 4.30272 4.31492 4.40540 4.47147 4.54025 4.67445 4.84261 4.87567 4.91518 4.93114 5.17130 5.28095 5.42945 5.50119 5.57474 5.69365 5.87002 6.01563 6.13098 6.51138 6.78911 7.23866 7.40587 8.88681 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.005061 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.991716 B = 5531.292021 C = 6244.492796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.164 6.164 3 C -0.131 4.131 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.148 4.148 8 C 0.150 3.850 9 N -0.667 5.667 10 C 0.523 3.477 11 O -0.553 6.553 12 C 0.028 3.972 13 H 0.043 0.957 14 C -0.120 4.120 15 C -0.531 4.531 16 H 0.052 0.948 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.275 1.275 23 H 0.126 0.874 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.159 0.841 27 H 0.163 0.837 28 H 0.146 0.854 29 H 0.119 0.881 30 H 0.415 0.585 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 3.073 -3.775 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.076 5.924 3 C -0.246 4.246 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.125 4.125 7 C -0.170 4.170 8 C 0.049 3.951 9 N -0.311 5.311 10 C 0.314 3.686 11 O -0.431 6.431 12 C 0.007 3.993 13 H 0.061 0.939 14 C -0.178 4.178 15 C -0.570 4.570 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.200 1.200 23 H 0.144 0.856 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.176 0.824 27 H 0.181 0.819 28 H 0.164 0.836 29 H 0.137 0.863 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.118 2.565 -3.438 19.593 hybrid contribution 0.443 0.853 0.291 1.004 sum -18.675 3.418 -3.147 19.245 Atomic orbital electron populations 1.23781 0.90250 1.08659 1.06855 1.85597 1.11412 1.02289 1.93103 1.21573 0.94113 0.98342 1.10529 1.21364 0.98447 0.92726 1.00796 1.21392 0.96532 0.95857 1.00288 1.21378 0.92563 0.99912 0.98626 1.21411 1.01308 0.91612 1.02706 1.17741 0.86706 0.89775 1.00861 1.43829 1.10101 1.15689 1.61511 1.21867 0.83428 0.88609 0.74725 1.90479 1.83402 1.25983 1.43198 1.18828 0.90351 0.93387 0.96766 0.93907 1.21576 1.01532 1.00622 0.94098 1.21203 0.94721 1.02572 1.38473 0.92962 1.25614 1.01387 0.95242 0.95606 1.69943 1.28218 1.11402 1.45325 0.85598 0.78777 0.78298 0.78885 1.20187 1.19874 1.20024 0.85584 0.88596 0.88193 0.82365 0.81945 0.83627 0.86287 0.74689 0.95536 0.90508 0.93512 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.15 113.37 1.04 -0.57 16 2 S -0.16 -3.99 21.27 -56.49 -1.20 -5.19 16 3 C -0.13 -3.73 6.12 22.71 0.14 -3.59 16 4 C -0.11 -2.38 9.36 22.39 0.21 -2.17 16 5 C -0.12 -2.51 10.04 22.27 0.22 -2.29 16 6 C -0.10 -2.78 10.04 22.29 0.22 -2.56 16 7 C -0.15 -5.37 8.72 22.37 0.20 -5.18 16 8 C 0.15 5.40 6.44 38.22 0.25 5.65 16 9 N -0.67 -26.35 5.02 -302.99 -1.52 -27.87 16 10 C 0.52 25.24 6.96 87.66 0.61 25.85 16 11 O -0.55 -29.76 12.63 -3.08 -0.04 -29.80 16 12 C 0.03 1.44 2.64 -12.28 -0.03 1.41 16 13 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 14 C -0.12 -5.67 8.87 71.98 0.64 -5.03 16 15 C -0.53 -31.03 8.37 25.60 0.21 -30.81 16 16 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 17 C 0.02 1.18 5.30 84.66 0.45 1.63 16 18 N -0.91 -51.39 11.32 21.45 0.24 -51.15 16 19 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.10 1.02 7.75 -2.39 -0.02 1.01 16 25 H 0.10 0.97 7.75 -2.39 -0.02 0.95 16 26 H 0.16 2.23 5.88 -2.91 -0.02 2.21 16 27 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.12 5.08 5.79 -2.92 -0.02 5.07 16 30 H 0.42 14.78 7.24 -92.71 -0.67 14.11 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 3.94 6.07 -2.39 -0.01 3.93 16 33 H 0.05 1.83 7.70 -2.38 -0.02 1.82 16 34 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -68.90 296.90 4.11 -64.79 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.45 Total: 19.75 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 4.15 Total: -17.66 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.28 Total: -79.02 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.20 Total: -5.19 kcal Total: -68.90 4.11 -64.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596700920.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.120 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds