Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.47067 * 136.05306 * 359.62756 * 6 4 2 8 8 C 1.53239 * 88.08252 * 207.20488 * 7 6 4 9 9 C 1.50697 * 114.32655 * 220.47210 * 8 7 6 10 10 H 1.07992 * 120.00129 * 93.76165 * 9 8 7 11 11 C 1.37875 * 119.99786 * 273.75891 * 9 8 7 12 12 N 1.31516 * 120.00669 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47225 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.47268 * 120.00026 * 13 11 9 16 16 H 1.48500 * 109.47302 * 240.00070 * 13 11 9 17 17 C 1.47061 * 136.06173 * 179.97438 * 6 4 2 18 18 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 19 19 C 1.33388 * 125.19940 * 120.00096 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 299.97622 * 18 2 1 23 23 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 24 24 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 26 26 H 1.09004 * 113.46972 * 321.93946 * 7 6 4 27 27 H 1.09006 * 113.46865 * 92.37626 * 7 6 4 28 28 H 1.09000 * 114.01389 * 87.71549 * 8 7 6 29 29 H 0.96999 * 120.00735 * 179.97438 * 12 11 9 30 30 H 1.08995 * 113.47021 * 267.62195 * 17 6 4 31 31 H 1.09006 * 113.46589 * 38.06933 * 17 6 4 32 32 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 33 33 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 34 34 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 0.9213 0.8722 2.9894 8 6 1.8034 0.8259 4.2415 9 6 1.0567 1.0278 5.5348 10 1 0.7030 0.1738 6.0931 11 6 0.8253 2.3030 6.0053 12 7 1.2566 3.3431 5.3258 13 14 -0.1009 2.5533 7.6081 14 1 -0.4752 1.2329 8.1750 15 1 0.7654 3.2779 8.5725 16 1 -1.3286 3.3483 7.3514 17 6 1.9857 -0.6455 3.8433 18 6 2.0323 -0.7104 -1.2305 19 6 2.8024 -0.1645 -2.1730 20 6 3.1404 -1.0127 -3.2135 21 6 2.6442 -2.2470 -3.1163 22 16 1.6932 -2.3861 -1.6432 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.0325 1.7923 2.4156 27 1 -0.1212 0.6192 3.1831 28 1 2.7110 1.4250 4.1672 29 1 1.0935 4.2402 5.6566 30 1 1.2296 -1.3066 4.2667 31 1 3.0006 -1.0136 3.9943 32 1 3.1367 0.8614 -2.1279 33 1 3.7589 -0.6987 -4.0413 34 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = 29.108063 kcal Electronic energy + Delta-G solvation = -17464.628146 eV Core-core repulsion = 14683.417941 eV Total energy + Delta-G solvation = -2781.210204 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74346 -37.95209 -36.91992 -33.73155 -32.68979 -29.36553 -28.25345 -25.43641 -25.00645 -24.45745 -22.72502 -20.31019 -19.26569 -18.37867 -16.94109 -16.74141 -16.25427 -15.41445 -15.04605 -14.82185 -14.48209 -13.78595 -13.16643 -12.99438 -12.75256 -12.58082 -12.33815 -12.12361 -11.87649 -11.73715 -11.51345 -11.30783 -11.23663 -10.98567 -10.80556 -10.50763 -10.36908 -9.61000 -9.25292 -9.03891 -8.62805 -8.52171 -8.23013 -7.89165 -6.21723 -4.27344 1.11133 1.79213 2.18931 2.81954 3.12258 3.20679 3.29950 3.33260 3.59152 4.30852 4.66228 4.89818 5.08302 5.10977 5.17605 5.35111 5.57082 5.62712 5.76235 5.84830 6.00573 6.13163 6.15945 6.20374 6.24475 6.37837 6.42849 6.50936 6.56662 6.62897 6.79334 7.52026 7.76218 8.14633 8.48294 8.71766 8.77298 9.39890 10.88051 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.004090 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.905520 B = 6844.687547 C = 6987.752011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 H 0.111 0.889 4 C 0.533 3.467 5 O -0.552 6.552 6 N -0.641 5.641 7 C 0.098 3.902 8 C 0.034 3.966 9 C -0.517 4.517 10 H 0.064 0.936 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.895 3.105 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.101 3.899 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.134 4.134 21 C -0.232 4.232 22 S 0.136 5.864 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.264 0.736 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -5.135 -13.554 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.128 0.872 4 C 0.321 3.679 5 O -0.432 6.432 6 N -0.374 5.374 7 C -0.024 4.024 8 C 0.014 3.986 9 C -0.555 4.555 10 H 0.082 0.918 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.021 4.021 18 C -0.262 4.262 19 C -0.177 4.177 20 C -0.166 4.166 21 C -0.368 4.368 22 S 0.401 5.599 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.645 -6.720 -13.153 14.861 hybrid contribution 0.362 1.458 0.059 1.504 sum -1.283 -5.262 -13.094 14.170 Atomic orbital electron populations 1.21849 0.91895 1.02814 1.03480 1.19746 0.97600 0.99897 0.88856 0.87153 1.19842 0.80920 0.84060 0.83034 1.90672 1.39509 1.26913 1.86070 1.49943 1.51247 1.31818 1.04429 1.23584 0.96742 0.86658 0.95451 1.20317 0.96193 0.89392 0.92660 1.20942 1.36214 0.92502 1.05837 0.91756 1.25025 0.95272 0.96015 0.97176 1.69954 1.45200 0.98423 1.38687 0.86485 0.79547 0.78402 0.83301 1.19548 1.20860 1.20878 1.23349 0.99816 1.01072 0.77898 1.24011 1.04931 0.97380 0.99908 1.20060 1.01031 1.01610 0.95005 1.20040 1.02983 0.93207 1.00323 1.25651 1.07142 1.01448 1.02544 1.84248 1.49861 1.10054 1.15765 0.91300 0.92263 0.90575 0.92150 0.90686 0.91391 0.92661 0.90870 0.92475 0.84524 0.84698 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.00 37.15 0.33 -1.58 16 2 C -0.04 -0.59 2.98 -92.92 -0.28 -0.87 16 3 H 0.11 1.60 8.08 -51.93 -0.42 1.18 16 4 C 0.53 10.41 7.37 -10.98 -0.08 10.33 16 5 O -0.55 -12.32 16.03 5.56 0.09 -12.23 16 6 N -0.64 -12.83 3.64 -185.39 -0.67 -13.51 16 7 C 0.10 1.98 6.30 -8.65 -0.05 1.93 16 8 C 0.03 0.77 3.77 -91.38 -0.34 0.43 16 9 C -0.52 -12.91 8.82 -34.44 -0.30 -13.22 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -23.66 13.26 55.43 0.74 -22.93 16 13 Si 0.90 19.74 29.54 -169.99 -5.02 14.71 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.10 2.09 8.19 -8.51 -0.07 2.02 16 18 C -0.14 -2.18 4.60 -36.00 -0.17 -2.34 16 19 C -0.15 -1.98 10.01 -41.20 -0.41 -2.39 16 20 C -0.13 -1.63 10.18 -41.20 -0.42 -2.05 16 21 C -0.23 -2.82 11.23 29.04 0.33 -2.49 16 22 S 0.14 1.95 22.18 -107.50 -2.38 -0.43 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 25 H 0.08 1.05 6.35 -51.93 -0.33 0.72 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 28 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 29 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 30 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -28.61 305.28 -8.73 -37.34 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.51 Total: 1.03 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.56 Total: -8.59 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.06 Total: -36.43 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.61 -8.73 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.447 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds