Wall clock time and date at job start Mon Mar 30 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.47067 * 136.05306 * 359.62756 * 6 4 2 8 8 C 1.53239 * 88.08252 * 207.20488 * 7 6 4 9 9 C 1.50697 * 114.32655 * 220.47210 * 8 7 6 10 10 H 1.07992 * 120.00129 * 93.76165 * 9 8 7 11 11 C 1.37875 * 119.99786 * 273.75891 * 9 8 7 12 12 N 1.31516 * 120.00669 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47225 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.47268 * 120.00026 * 13 11 9 16 16 H 1.48500 * 109.47302 * 240.00070 * 13 11 9 17 17 C 1.47061 * 136.06173 * 179.97438 * 6 4 2 18 18 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 19 19 C 1.33388 * 125.19940 * 120.00096 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 299.97622 * 18 2 1 23 23 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 24 24 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 26 26 H 1.09004 * 113.46972 * 321.93946 * 7 6 4 27 27 H 1.09006 * 113.46865 * 92.37626 * 7 6 4 28 28 H 1.09000 * 114.01389 * 87.71549 * 8 7 6 29 29 H 0.96999 * 120.00735 * 179.97438 * 12 11 9 30 30 H 1.08995 * 113.47021 * 267.62195 * 17 6 4 31 31 H 1.09006 * 113.46589 * 38.06933 * 17 6 4 32 32 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 33 33 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 34 34 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 0.9213 0.8722 2.9894 8 6 1.8034 0.8259 4.2415 9 6 1.0567 1.0278 5.5348 10 1 0.7030 0.1738 6.0931 11 6 0.8253 2.3030 6.0053 12 7 1.2566 3.3431 5.3258 13 14 -0.1009 2.5533 7.6081 14 1 -0.4752 1.2329 8.1750 15 1 0.7654 3.2779 8.5725 16 1 -1.3286 3.3483 7.3514 17 6 1.9857 -0.6455 3.8433 18 6 2.0323 -0.7104 -1.2305 19 6 2.8024 -0.1645 -2.1730 20 6 3.1404 -1.0127 -3.2135 21 6 2.6442 -2.2470 -3.1163 22 16 1.6932 -2.3861 -1.6432 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.0325 1.7923 2.4156 27 1 -0.1212 0.6192 3.1831 28 1 2.7110 1.4250 4.1672 29 1 1.0935 4.2402 5.6566 30 1 1.2296 -1.3066 4.2667 31 1 3.0006 -1.0136 3.9943 32 1 3.1367 0.8614 -2.1279 33 1 3.7589 -0.6987 -4.0413 34 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:14 Heat of formation + Delta-G solvation = 13.669219 kcal Electronic energy + Delta-G solvation = -17465.297624 eV Core-core repulsion = 14683.417941 eV Total energy + Delta-G solvation = -2781.879683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31739 -39.27136 -38.29740 -34.99615 -34.56620 -30.95954 -29.40492 -27.19312 -26.67602 -25.62536 -23.95249 -21.95306 -20.28261 -19.90953 -18.70839 -18.07187 -17.74888 -16.69413 -16.51176 -16.36050 -16.11492 -15.22411 -14.47729 -14.37260 -14.11515 -13.89004 -13.57943 -13.33230 -13.27457 -13.16235 -13.04385 -12.75847 -12.68645 -12.51440 -12.41486 -12.15428 -11.55825 -11.34670 -11.05469 -10.72364 -10.50995 -9.57915 -9.56404 -9.29777 -8.16020 -6.26905 0.08705 0.76290 1.18125 1.46884 1.50906 1.59303 1.61295 1.79160 2.09674 2.47388 3.14527 3.46690 3.57654 4.01332 4.16765 4.25026 4.27039 4.40845 4.54069 4.62871 4.68519 4.70532 4.75357 4.77415 4.85974 4.96122 5.07822 5.12538 5.21854 5.39372 5.60352 5.61248 5.82310 6.24012 6.81813 6.89276 7.13583 7.43329 8.94121 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.004090 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.905520 B = 6844.687547 C = 6987.752011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 H 0.121 0.879 4 C 0.528 3.472 5 O -0.582 6.582 6 N -0.642 5.642 7 C 0.117 3.883 8 C 0.021 3.979 9 C -0.527 4.527 10 H 0.066 0.934 11 C 0.024 3.976 12 N -0.917 5.917 13 Si 0.957 3.043 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.279 1.279 17 C 0.105 3.895 18 C -0.172 4.172 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.219 4.219 22 S 0.091 5.909 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 -5.086 -14.773 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 H 0.139 0.861 4 C 0.319 3.681 5 O -0.464 6.464 6 N -0.375 5.375 7 C -0.006 4.006 8 C 0.002 3.998 9 C -0.565 4.565 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.556 5.556 13 Si 0.783 3.217 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.205 1.205 17 C -0.018 4.018 18 C -0.290 4.290 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.355 4.355 22 S 0.356 5.644 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.146 -6.678 -14.378 15.998 hybrid contribution 0.609 1.400 0.373 1.572 sum -1.537 -5.278 -14.005 15.045 Atomic orbital electron populations 1.21826 0.90361 1.02801 1.04411 1.19728 0.98819 0.99767 0.87057 0.86099 1.20622 0.80061 0.83797 0.83657 1.90648 1.40809 1.28397 1.86517 1.49949 1.51327 1.31714 1.04537 1.23305 0.96505 0.86901 0.93863 1.20204 0.95611 0.90529 0.93495 1.21220 1.36039 0.92666 1.06617 0.91624 1.25722 0.96105 0.95803 1.00059 1.70053 1.46508 0.98766 1.40227 0.85518 0.78264 0.78347 0.79591 1.18930 1.21062 1.20458 1.23231 0.99984 0.99795 0.78744 1.24030 1.06879 0.97611 1.00471 1.20434 0.99586 1.02613 0.94714 1.20393 1.03095 0.92858 1.00774 1.26007 1.05636 1.02363 1.01445 1.84367 1.51388 1.10707 1.17987 0.88873 0.92764 0.91029 0.91809 0.89846 0.94332 0.92622 0.89873 0.92854 0.82882 0.81618 0.79491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.00 71.98 0.65 -2.83 16 2 C -0.03 -0.93 2.98 -12.29 -0.04 -0.97 16 3 H 0.12 3.34 8.08 -2.39 -0.02 3.32 16 4 C 0.53 20.51 7.37 87.66 0.65 21.16 16 5 O -0.58 -26.11 16.03 -3.03 -0.05 -26.16 16 6 N -0.64 -25.62 3.64 -858.83 -3.13 -28.75 16 7 C 0.12 4.68 6.30 83.09 0.52 5.20 16 8 C 0.02 0.97 3.77 -11.29 -0.04 0.93 16 9 C -0.53 -26.35 8.82 25.60 0.23 -26.13 16 10 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 11 C 0.02 1.19 5.46 84.65 0.46 1.66 16 12 N -0.92 -49.25 13.26 21.45 0.28 -48.96 16 13 Si 0.96 40.19 29.54 68.60 2.03 42.22 16 14 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 17 C 0.10 4.37 8.19 83.18 0.68 5.05 16 18 C -0.17 -4.98 4.60 24.59 0.11 -4.87 16 19 C -0.14 -3.53 10.01 21.22 0.21 -3.32 16 20 C -0.14 -2.99 10.18 21.22 0.22 -2.77 16 21 C -0.22 -4.77 11.23 66.72 0.75 -4.02 16 22 S 0.09 2.55 22.18 -56.49 -1.25 1.29 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.43 8.00 -2.39 -0.02 1.41 16 25 H 0.07 1.87 6.35 -2.38 -0.02 1.86 16 26 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.08 3.22 8.05 -2.38 -0.02 3.20 16 28 H 0.04 2.01 8.11 -2.39 -0.02 1.99 16 29 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.08 3.29 8.10 -2.39 -0.02 3.27 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.75 305.28 3.37 -57.38 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.09 Total: 13.89 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.40 Total: -10.91 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.84 Total: -77.71 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.25 Total: 1.29 kcal Total: -60.75 3.37 -57.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.047 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds