Wall clock time and date at job start Mon Mar 30 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 S 1.81401 * 109.47457 * 239.99872 * 2 1 3 5 5 C 1.81397 * 102.99748 * 65.00033 * 4 2 1 6 6 C 1.50704 * 109.46787 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.37094 * 119.99893 * 179.97438 * 8 6 5 10 10 H 1.08004 * 120.00157 * 0.02562 * 9 8 6 11 11 C 1.38954 * 119.99869 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99562 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47073 * 90.00834 * 13 11 9 15 15 H 1.48508 * 109.46749 * 210.00299 * 13 11 9 16 16 H 1.48496 * 109.47680 * 330.00133 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.38237 * 119.99747 * 59.72563 * 17 2 1 19 19 C 1.38240 * 119.99788 * 179.81066 * 18 17 2 20 20 C 1.38236 * 119.99657 * 0.39831 * 19 18 17 21 21 C 1.38230 * 120.00403 * 359.85459 * 20 19 18 22 22 C 1.38232 * 120.00112 * 240.00114 * 17 2 1 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47383 * 299.99806 * 5 4 2 27 27 H 1.09000 * 109.47141 * 60.00464 * 5 4 2 28 28 H 0.97001 * 119.99807 * 0.02562 * 8 6 5 29 29 H 0.96998 * 119.99909 * 179.97438 * 12 11 9 30 30 H 1.08003 * 120.00234 * 0.02562 * 18 17 2 31 31 H 1.07995 * 119.99993 * 180.23158 * 19 18 17 32 32 H 1.08005 * 119.99783 * 179.83592 * 20 19 18 33 33 H 1.08000 * 120.00473 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.99991 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8551 -1.4811 5 6 1.5666 0.2153 -2.8308 6 6 1.9976 -0.3696 -4.1512 7 8 2.6266 -1.4063 -4.1788 8 7 1.6840 0.2593 -5.3013 9 6 2.0766 -0.2725 -6.5024 10 1 2.6367 -1.1956 -6.5270 11 6 1.7529 0.3756 -7.6881 12 7 1.0709 1.4985 -7.6582 13 14 2.2872 -0.3495 -9.3247 14 1 1.2326 -1.2660 -9.8279 15 1 2.5005 0.7454 -10.3051 16 1 3.5530 -1.1040 -9.1422 17 6 2.0323 -0.7104 1.2305 18 6 1.6936 -2.0322 1.4521 19 6 2.1576 -2.6850 2.5788 20 6 2.9535 -2.0136 3.4881 21 6 3.2878 -0.6903 3.2691 22 6 2.8270 -0.0386 2.1405 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.4793 0.2881 -2.8037 27 1 2.0003 1.2084 -2.7141 28 1 1.1813 1.0885 -5.2791 29 1 0.8453 1.9511 -8.4859 30 1 1.0694 -2.5559 0.7432 31 1 1.8961 -3.7187 2.7501 32 1 3.3138 -2.5228 4.3697 33 1 3.9092 -0.1656 3.9797 34 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600601984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:13 Heat of formation + Delta-G solvation = -22.057590 kcal Electronic energy + Delta-G solvation = -16637.794709 eV Core-core repulsion = 13854.365795 eV Total energy + Delta-G solvation = -2783.428914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38333 -38.11309 -34.32327 -34.00396 -31.37479 -30.99280 -29.81761 -28.80323 -24.63698 -24.19637 -22.62151 -21.10674 -19.51382 -18.01664 -17.04081 -16.19620 -15.86446 -15.49712 -14.78992 -14.53162 -14.51296 -14.11107 -13.83470 -13.52553 -13.43949 -13.15879 -12.52786 -12.26635 -12.15067 -11.84447 -11.69003 -11.50015 -11.09751 -11.04752 -10.88019 -10.41637 -10.25598 -9.57209 -9.53477 -8.98454 -8.72344 -8.54663 -8.04509 -7.26632 -6.47170 -3.88335 1.09674 1.33287 2.02436 2.90231 3.15230 3.24680 3.31171 3.75973 3.79893 4.14507 4.50121 4.71966 4.89810 4.90880 5.01170 5.07903 5.16949 5.18941 5.39998 5.48117 5.56123 5.64172 5.68638 5.77695 5.89452 5.97270 6.06315 6.20359 6.37128 6.43292 6.53345 6.90775 7.50748 7.97300 8.51985 9.10616 9.44624 9.95136 10.70369 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.051072 B = 0.003447 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.112663 B = 8120.110266 C = 8334.931087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 H 0.090 0.910 4 S -0.165 6.165 5 C -0.115 4.115 6 C 0.454 3.546 7 O -0.576 6.576 8 N -0.555 5.555 9 C -0.301 4.301 10 H 0.105 0.895 11 C 0.024 3.976 12 N -0.900 5.900 13 Si 0.932 3.068 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.268 1.268 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.108 4.108 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.393 0.607 29 H 0.273 0.727 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -0.389 19.322 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 H 0.108 0.892 4 S 0.064 5.936 5 C -0.266 4.266 6 C 0.238 3.762 7 O -0.460 6.460 8 N -0.191 5.191 9 C -0.430 4.430 10 H 0.123 0.877 11 C -0.178 4.178 12 N -0.541 5.541 13 Si 0.759 3.241 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.058 4.058 18 C -0.119 4.119 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.128 4.128 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.351 -1.887 18.999 19.095 hybrid contribution -0.805 1.551 -0.837 1.938 sum -1.157 -0.336 18.162 18.202 Atomic orbital electron populations 1.22096 0.92666 1.03320 1.02104 1.22221 0.98881 1.01616 0.94948 0.89178 1.87587 1.74452 1.35337 0.96181 1.23498 1.04325 1.02026 0.96800 1.19007 0.86094 0.87133 0.83940 1.90563 1.44264 1.24748 1.86426 1.41770 1.49186 1.23663 1.04508 1.19743 1.32991 1.08351 0.81952 0.87730 1.25287 0.96762 0.95842 0.99909 1.69610 1.38780 1.16595 1.29108 0.85826 0.79272 0.78354 0.80676 1.20298 1.20850 1.19289 1.19260 0.97963 0.94403 0.94178 1.21114 0.99630 0.93962 0.97236 1.21146 0.98189 0.99889 0.94560 1.21147 0.98693 0.94871 0.99444 1.21085 1.00256 0.95030 0.97616 1.21030 0.97458 0.99980 0.94326 0.92061 0.92006 0.91171 0.88782 0.88894 0.77319 0.91745 0.85382 0.85995 0.86255 0.86107 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.91 37.16 0.33 -1.26 16 2 C -0.05 -0.62 3.01 -27.88 -0.08 -0.70 16 3 H 0.09 1.06 7.88 -51.92 -0.41 0.65 16 4 S -0.16 -2.89 19.91 -107.50 -2.14 -5.03 16 5 C -0.11 -2.09 6.12 36.01 0.22 -1.87 16 6 C 0.45 11.00 7.80 -10.98 -0.09 10.91 16 7 O -0.58 -16.15 15.44 5.55 0.09 -16.06 16 8 N -0.55 -14.18 5.29 -10.96 -0.06 -14.23 16 9 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 10 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 11 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 12 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 13 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.06 -0.70 4.78 -104.62 -0.50 -1.20 16 18 C -0.10 -1.21 8.78 -39.58 -0.35 -1.56 16 19 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.11 -1.19 9.67 -39.58 -0.38 -1.58 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.68 6.92 -51.93 -0.36 0.32 16 25 H 0.07 0.79 7.38 -51.93 -0.38 0.41 16 26 H 0.09 1.50 7.14 -51.92 -0.37 1.13 16 27 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 28 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.13 1.55 7.57 -52.48 -0.40 1.15 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.14 7.95 -52.48 -0.42 0.72 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -31.68 307.60 -8.34 -40.02 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.28 Total: 8.43 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.28 Total: -10.12 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.67 Total: -37.86 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.14 Total: -5.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.68 -8.34 -40.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600601984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.963 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds