Wall clock time and date at job start Mon Mar 30 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 S 1.81401 * 109.47457 * 239.99872 * 2 1 3 5 5 C 1.81397 * 102.99748 * 65.00033 * 4 2 1 6 6 C 1.50704 * 109.46787 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.37094 * 119.99893 * 179.97438 * 8 6 5 10 10 H 1.08004 * 120.00157 * 0.02562 * 9 8 6 11 11 C 1.38954 * 119.99869 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99562 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47073 * 90.00834 * 13 11 9 15 15 H 1.48508 * 109.46749 * 210.00299 * 13 11 9 16 16 H 1.48496 * 109.47680 * 330.00133 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.38237 * 119.99747 * 59.72563 * 17 2 1 19 19 C 1.38240 * 119.99788 * 179.81066 * 18 17 2 20 20 C 1.38236 * 119.99657 * 0.39831 * 19 18 17 21 21 C 1.38230 * 120.00403 * 359.85459 * 20 19 18 22 22 C 1.38232 * 120.00112 * 240.00114 * 17 2 1 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47383 * 299.99806 * 5 4 2 27 27 H 1.09000 * 109.47141 * 60.00464 * 5 4 2 28 28 H 0.97001 * 119.99807 * 0.02562 * 8 6 5 29 29 H 0.96998 * 119.99909 * 179.97438 * 12 11 9 30 30 H 1.08003 * 120.00234 * 0.02562 * 18 17 2 31 31 H 1.07995 * 119.99993 * 180.23158 * 19 18 17 32 32 H 1.08005 * 119.99783 * 179.83592 * 20 19 18 33 33 H 1.08000 * 120.00473 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.99991 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8551 -1.4811 5 6 1.5666 0.2153 -2.8308 6 6 1.9976 -0.3696 -4.1512 7 8 2.6266 -1.4063 -4.1788 8 7 1.6840 0.2593 -5.3013 9 6 2.0766 -0.2725 -6.5024 10 1 2.6367 -1.1956 -6.5270 11 6 1.7529 0.3756 -7.6881 12 7 1.0709 1.4985 -7.6582 13 14 2.2872 -0.3495 -9.3247 14 1 1.2326 -1.2660 -9.8279 15 1 2.5005 0.7454 -10.3051 16 1 3.5530 -1.1040 -9.1422 17 6 2.0323 -0.7104 1.2305 18 6 1.6936 -2.0322 1.4521 19 6 2.1576 -2.6850 2.5788 20 6 2.9535 -2.0136 3.4881 21 6 3.2878 -0.6903 3.2691 22 6 2.8270 -0.0386 2.1405 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.4793 0.2881 -2.8037 27 1 2.0003 1.2084 -2.7141 28 1 1.1813 1.0885 -5.2791 29 1 0.8453 1.9511 -8.4859 30 1 1.0694 -2.5559 0.7432 31 1 1.8961 -3.7187 2.7501 32 1 3.3138 -2.5228 4.3697 33 1 3.9092 -0.1656 3.9797 34 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600601984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:12 Heat of formation + Delta-G solvation = -40.660757 kcal Electronic energy + Delta-G solvation = -16638.601403 eV Core-core repulsion = 13854.365795 eV Total energy + Delta-G solvation = -2784.235607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22423 -40.06306 -36.07283 -35.20270 -33.41052 -31.78754 -31.12544 -30.00868 -26.65583 -25.08405 -23.42482 -22.09052 -21.32196 -20.04225 -18.13579 -17.69792 -17.20844 -16.55720 -16.35511 -16.18116 -15.90590 -15.55974 -14.82948 -14.75995 -14.38944 -14.23131 -14.10803 -13.65336 -13.53626 -13.13494 -12.93373 -12.79518 -12.62967 -12.46535 -12.12999 -11.87714 -11.76998 -11.57512 -10.73418 -10.54902 -10.09726 -9.79427 -9.59350 -8.63665 -8.52175 -6.01769 0.12699 0.52252 0.86920 1.35385 1.40915 1.53929 1.66527 1.92577 2.27784 2.93946 3.10774 3.13933 3.59871 3.86028 4.13181 4.17320 4.19065 4.22251 4.28295 4.33203 4.39607 4.62968 4.68064 4.76924 4.87685 5.09909 5.18176 5.20185 5.36647 5.58455 5.64273 5.68431 5.90612 6.12390 6.49737 7.04335 7.43630 7.98862 8.65081 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.051072 B = 0.003447 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.112663 B = 8120.110266 C = 8334.931087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 H 0.104 0.896 4 S -0.228 6.228 5 C -0.098 4.098 6 C 0.449 3.551 7 O -0.619 6.619 8 N -0.562 5.562 9 C -0.338 4.338 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.917 5.917 13 Si 0.995 3.005 14 H -0.269 1.269 15 H -0.268 1.268 16 H -0.273 1.273 17 C -0.077 4.077 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.116 4.116 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.399 0.601 29 H 0.280 0.720 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 0.491 20.654 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 H 0.122 0.878 4 S 0.001 5.999 5 C -0.249 4.249 6 C 0.235 3.765 7 O -0.506 6.506 8 N -0.198 5.198 9 C -0.467 4.467 10 H 0.097 0.903 11 C -0.209 4.209 12 N -0.557 5.557 13 Si 0.818 3.182 14 H -0.195 1.195 15 H -0.193 1.193 16 H -0.198 1.198 17 C -0.079 4.079 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.136 4.136 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.233 0.767 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.508 -0.979 20.334 20.364 hybrid contribution -0.752 1.260 -1.094 1.830 sum -1.260 0.281 19.240 19.283 Atomic orbital electron populations 1.22082 0.91434 1.03322 1.03120 1.22228 0.99716 1.01359 0.91972 0.87816 1.87794 1.75601 1.37430 0.99061 1.23280 1.05792 1.02412 0.93404 1.19953 0.84609 0.86355 0.85539 1.90532 1.45879 1.26706 1.87497 1.41808 1.49539 1.23957 1.04529 1.19696 1.34735 1.08544 0.83763 0.90257 1.26068 0.96206 0.96008 1.02631 1.69661 1.38631 1.17026 1.30368 0.84907 0.78673 0.78008 0.76635 1.19471 1.19266 1.19786 1.19338 0.99343 0.94786 0.94431 1.21191 1.00324 0.94298 0.97929 1.21419 0.98220 1.00823 0.94243 1.21524 0.97684 0.95008 0.99878 1.21454 0.99939 0.95247 0.97581 1.21289 0.96967 1.00838 0.94499 0.89986 0.91839 0.91767 0.86337 0.86481 0.76682 0.91048 0.86408 0.84405 0.83621 0.83511 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.91 71.98 0.64 -2.27 16 2 C -0.02 -0.60 3.01 29.85 0.09 -0.51 16 3 H 0.10 2.22 7.88 -2.39 -0.02 2.20 16 4 S -0.23 -8.03 19.91 -56.49 -1.12 -9.15 16 5 C -0.10 -3.51 6.12 71.24 0.44 -3.07 16 6 C 0.45 22.19 7.80 87.66 0.68 22.88 16 7 O -0.62 -36.00 15.44 -3.05 -0.05 -36.04 16 8 N -0.56 -29.23 5.29 -306.97 -1.62 -30.86 16 9 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 10 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 11 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 12 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 13 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 C -0.08 -1.83 4.78 -19.87 -0.09 -1.92 16 18 C -0.12 -2.80 8.78 22.27 0.20 -2.61 16 19 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 20 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 21 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 22 C -0.12 -2.32 9.67 22.27 0.22 -2.11 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.28 6.92 -2.39 -0.02 1.27 16 25 H 0.06 1.40 7.38 -2.39 -0.02 1.39 16 26 H 0.12 3.64 7.14 -2.39 -0.02 3.62 16 27 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 28 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.12 2.93 7.57 -2.91 -0.02 2.91 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.14 2.22 7.95 -2.91 -0.02 2.19 16 Total: -1.00 -69.45 307.60 4.01 -65.44 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.37 Total: 28.77 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 4.12 Total: -14.23 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.34 Total: -79.71 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.04 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.12 Total: -9.15 kcal Total: -69.45 4.01 -65.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600601984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.780 kcal (2) G-P(sol) polarization free energy of solvation -69.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds