Wall clock time and date at job start Mon Mar 30 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81396 * 103.00480 * 2 1 4 4 C 1.52995 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.04450 * 265.27717 * 5 4 3 7 7 C 1.38311 * 120.08565 * 180.31423 * 6 5 4 8 8 C 1.38345 * 120.16326 * 359.68227 * 7 6 5 9 9 C 1.38043 * 120.08865 * 0.02562 * 8 7 6 10 10 C 1.39012 * 120.03763 * 84.99763 * 5 4 3 11 11 N 1.39525 * 120.08526 * 359.97438 * 10 5 4 12 12 C 1.34784 * 119.99898 * 154.87000 * 11 10 5 13 13 O 1.21743 * 119.99795 * 354.47699 * 12 11 10 14 14 C 1.46164 * 119.99947 * 174.19921 * 12 11 10 15 15 H 1.07998 * 120.00180 * 0.28021 * 14 12 11 16 16 C 1.40126 * 120.00015 * 180.27220 * 14 12 11 17 17 N 1.30639 * 119.99741 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00068 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47422 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47015 * 120.00576 * 18 16 14 21 21 H 1.48502 * 109.47321 * 239.99962 * 18 16 14 22 22 H 1.09000 * 109.47149 * 300.00347 * 1 2 3 23 23 H 1.09001 * 109.46771 * 59.99831 * 1 2 3 24 24 H 1.08993 * 109.47591 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47067 * 59.99702 * 3 2 1 26 26 H 1.09007 * 109.46918 * 300.00195 * 3 2 1 27 27 H 1.08996 * 109.47402 * 59.99735 * 4 3 2 28 28 H 1.09007 * 109.47112 * 299.99904 * 4 3 2 29 29 H 1.08002 * 119.95468 * 359.97438 * 6 5 4 30 30 H 1.07995 * 119.91434 * 179.69948 * 7 6 5 31 31 H 1.08005 * 119.95558 * 180.02562 * 8 7 6 32 32 H 1.07991 * 120.04536 * 180.02562 * 9 8 7 33 33 H 0.97000 * 120.00551 * 334.86577 * 11 10 5 34 34 H 0.97003 * 119.99263 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 6 4.0815 3.4082 -0.0013 6 6 4.3325 4.0592 -1.1928 7 6 4.6502 5.4054 -1.1938 8 6 4.7113 6.1061 -0.0025 9 6 4.4557 5.4636 1.1922 10 6 4.1363 4.1102 1.1973 11 7 3.8771 3.4573 2.4028 12 6 4.3949 3.9339 3.5523 13 8 5.1692 4.8731 3.5278 14 6 4.0220 3.3272 4.8287 15 1 3.3352 2.4941 4.8505 16 6 4.5559 3.8264 6.0242 17 7 5.3866 4.8344 5.9980 18 14 4.0800 3.0506 7.6555 19 1 3.1324 1.9329 7.4144 20 1 5.2966 2.5307 8.3300 21 1 3.4332 4.0710 8.5190 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8033 2.2371 0.8899 26 1 1.8032 2.2371 -0.8900 27 1 4.1610 1.4703 -0.8908 28 1 4.1617 1.4701 0.8892 29 1 4.2861 3.5153 -2.1247 30 1 4.8507 5.9107 -2.1270 31 1 4.9593 7.1573 -0.0073 32 1 4.5032 6.0113 2.1217 33 1 3.3242 2.6604 2.4137 34 1 5.7564 5.1797 6.8256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601718115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:45 Heat of formation + Delta-G solvation = -24.878776 kcal Electronic energy + Delta-G solvation = -17424.716835 eV Core-core repulsion = 14641.165586 eV Total energy + Delta-G solvation = -2783.551249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50170 -37.00152 -34.17743 -33.21018 -32.35130 -29.50109 -29.07026 -28.57846 -26.23167 -23.73234 -22.37447 -20.59102 -19.69239 -17.61573 -16.43929 -16.21920 -15.64842 -15.28853 -14.89567 -14.24194 -14.04466 -13.87086 -13.56040 -13.38846 -13.20912 -12.80787 -12.64051 -12.45494 -11.95225 -11.52976 -11.37592 -11.30940 -11.13635 -10.76209 -10.64669 -10.50994 -10.31924 -9.97918 -9.41911 -8.93482 -8.26508 -7.72678 -7.70578 -7.01591 -6.38253 -4.85856 1.58846 1.97594 2.09422 2.56964 3.04103 3.12803 3.17258 3.96450 4.21573 4.52411 4.58995 4.96141 5.01937 5.03897 5.12842 5.27167 5.41610 5.57003 5.59652 5.64029 5.66761 5.73297 5.98883 6.10594 6.35268 6.43066 6.62894 6.95941 7.10729 7.20324 7.25106 7.46748 7.70366 8.04479 8.14358 8.81476 9.16071 10.33232 10.52026 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.006532 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.273161 B = 4285.272012 C = 6077.051281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.272 6.272 3 C -0.076 4.076 4 C -0.055 4.055 5 C -0.152 4.152 6 C -0.093 4.093 7 C -0.172 4.172 8 C -0.100 4.100 9 C -0.141 4.141 10 C 0.202 3.798 11 N -0.693 5.693 12 C 0.541 3.459 13 O -0.556 6.556 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.087 3.913 17 N -0.758 5.758 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.152 0.848 33 H 0.392 0.608 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -5.148 -10.808 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.224 4.224 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.111 4.111 7 C -0.192 4.192 8 C -0.119 4.119 9 C -0.162 4.162 10 C 0.101 3.899 11 N -0.334 5.334 12 C 0.348 3.652 13 O -0.439 6.439 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.386 5.386 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.200 1.200 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.226 0.774 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.109 -5.263 -10.564 13.290 hybrid contribution -1.322 0.268 0.763 1.550 sum -7.431 -4.995 -9.802 13.276 Atomic orbital electron populations 1.23348 0.94455 1.06238 1.04906 1.86876 1.07117 1.12469 1.98094 1.23504 1.00583 0.93069 1.05231 1.20092 0.91984 0.93368 1.03868 1.19348 1.09267 0.94406 0.92763 1.20611 0.99841 0.94504 0.96194 1.20832 1.06137 0.94699 0.97544 1.21018 0.99208 0.99330 0.92327 1.21684 1.01560 0.93349 0.99592 1.17905 0.94664 0.91450 0.85859 1.44227 1.53141 1.30469 1.05601 1.18405 0.80493 0.83995 0.82331 1.90586 1.37246 1.30282 1.85747 1.20904 1.28923 1.18153 0.89266 0.90925 1.25744 0.93274 0.93885 1.00563 1.69992 1.21395 1.18751 1.28453 0.86235 0.79164 0.79748 0.81248 1.18569 1.19929 1.19965 0.90390 0.90703 0.88303 0.89936 0.89970 0.90432 0.90192 0.86928 0.87209 0.86821 0.83088 0.77395 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.76 101.05 1.09 -0.03 16 2 S -0.27 -3.40 22.38 -107.50 -2.41 -5.81 16 3 C -0.08 -0.98 5.84 37.16 0.22 -0.76 16 4 C -0.05 -0.79 4.72 -27.88 -0.13 -0.93 16 5 C -0.15 -2.59 5.15 -104.39 -0.54 -3.13 16 6 C -0.09 -1.43 9.67 -39.61 -0.38 -1.81 16 7 C -0.17 -2.69 10.04 -39.52 -0.40 -3.09 16 8 C -0.10 -1.78 10.04 -39.61 -0.40 -2.17 16 9 C -0.14 -3.03 8.71 -39.35 -0.34 -3.38 16 10 C 0.20 4.18 6.41 -83.77 -0.54 3.65 16 11 N -0.69 -15.42 4.97 -11.20 -0.06 -15.48 16 12 C 0.54 14.78 7.54 -13.08 -0.10 14.68 16 13 O -0.56 -17.00 12.17 5.15 0.06 -16.94 16 14 C -0.54 -14.50 9.54 -35.69 -0.34 -14.84 16 15 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 16 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16 17 N -0.76 -21.72 11.82 55.55 0.66 -21.06 16 18 Si 0.91 19.36 29.56 -169.99 -5.02 14.33 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 23 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.12 7.44 -51.93 -0.39 0.74 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.08 1.02 8.05 -51.93 -0.42 0.61 16 28 H 0.08 1.28 7.27 -51.93 -0.38 0.90 16 29 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.15 3.76 5.78 -52.49 -0.30 3.45 16 33 H 0.39 7.69 6.74 -40.82 -0.27 7.42 16 34 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -31.26 304.32 -8.40 -39.67 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.27 Total: 10.29 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.96 Total: -9.60 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.60 Total: -36.54 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.06 Total: -16.94 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.41 Total: -5.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.26 -8.40 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601718115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.787 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds