Wall clock time and date at job start Mon Mar 30 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81396 * 103.00480 * 2 1 4 4 C 1.52995 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.04450 * 265.27717 * 5 4 3 7 7 C 1.38311 * 120.08565 * 180.31423 * 6 5 4 8 8 C 1.38345 * 120.16326 * 359.68227 * 7 6 5 9 9 C 1.38043 * 120.08865 * 0.02562 * 8 7 6 10 10 C 1.39012 * 120.03763 * 84.99763 * 5 4 3 11 11 N 1.39525 * 120.08526 * 359.97438 * 10 5 4 12 12 C 1.34784 * 119.99898 * 154.87000 * 11 10 5 13 13 O 1.21743 * 119.99795 * 354.47699 * 12 11 10 14 14 C 1.46164 * 119.99947 * 174.19921 * 12 11 10 15 15 H 1.07998 * 120.00180 * 0.28021 * 14 12 11 16 16 C 1.40126 * 120.00015 * 180.27220 * 14 12 11 17 17 N 1.30639 * 119.99741 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00068 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47422 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47015 * 120.00576 * 18 16 14 21 21 H 1.48502 * 109.47321 * 239.99962 * 18 16 14 22 22 H 1.09000 * 109.47149 * 300.00347 * 1 2 3 23 23 H 1.09001 * 109.46771 * 59.99831 * 1 2 3 24 24 H 1.08993 * 109.47591 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47067 * 59.99702 * 3 2 1 26 26 H 1.09007 * 109.46918 * 300.00195 * 3 2 1 27 27 H 1.08996 * 109.47402 * 59.99735 * 4 3 2 28 28 H 1.09007 * 109.47112 * 299.99904 * 4 3 2 29 29 H 1.08002 * 119.95468 * 359.97438 * 6 5 4 30 30 H 1.07995 * 119.91434 * 179.69948 * 7 6 5 31 31 H 1.08005 * 119.95558 * 180.02562 * 8 7 6 32 32 H 1.07991 * 120.04536 * 180.02562 * 9 8 7 33 33 H 0.97000 * 120.00551 * 334.86577 * 11 10 5 34 34 H 0.97003 * 119.99263 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 6 4.0815 3.4082 -0.0013 6 6 4.3325 4.0592 -1.1928 7 6 4.6502 5.4054 -1.1938 8 6 4.7113 6.1061 -0.0025 9 6 4.4557 5.4636 1.1922 10 6 4.1363 4.1102 1.1973 11 7 3.8771 3.4573 2.4028 12 6 4.3949 3.9339 3.5523 13 8 5.1692 4.8731 3.5278 14 6 4.0220 3.3272 4.8287 15 1 3.3352 2.4941 4.8505 16 6 4.5559 3.8264 6.0242 17 7 5.3866 4.8344 5.9980 18 14 4.0800 3.0506 7.6555 19 1 3.1324 1.9329 7.4144 20 1 5.2966 2.5307 8.3300 21 1 3.4332 4.0710 8.5190 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8033 2.2371 0.8899 26 1 1.8032 2.2371 -0.8900 27 1 4.1610 1.4703 -0.8908 28 1 4.1617 1.4701 0.8892 29 1 4.2861 3.5153 -2.1247 30 1 4.8507 5.9107 -2.1270 31 1 4.9593 7.1573 -0.0073 32 1 4.5032 6.0113 2.1217 33 1 3.3242 2.6604 2.4137 34 1 5.7564 5.1797 6.8256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601718115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:45 Heat of formation + Delta-G solvation = -43.842028 kcal Electronic energy + Delta-G solvation = -17425.539144 eV Core-core repulsion = 14641.165586 eV Total energy + Delta-G solvation = -2784.373558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.07932 -38.81769 -35.62109 -34.97787 -34.26206 -30.89171 -30.25814 -29.66475 -28.16726 -24.94984 -24.01168 -22.05794 -21.39921 -19.46276 -18.01434 -17.61138 -17.26826 -16.59747 -16.38752 -15.76944 -15.35206 -15.15944 -14.81625 -14.70665 -14.49178 -14.18132 -14.08433 -13.84691 -13.25921 -13.16880 -12.86718 -12.79143 -12.76088 -12.51120 -12.02305 -11.98591 -11.82674 -11.15595 -10.94165 -10.87564 -9.90616 -9.55137 -8.67770 -8.65890 -8.39112 -6.97371 0.44084 0.64016 0.80143 1.37521 1.37988 1.55971 1.67528 2.18879 2.35309 2.89139 2.97721 3.55888 3.85391 3.94631 4.04180 4.19635 4.33921 4.34906 4.38222 4.51333 4.55166 4.69290 4.84217 4.90302 4.95422 5.08419 5.22756 5.23822 5.52358 5.65072 5.74375 5.81715 6.00168 6.14659 6.44083 6.75143 7.28812 8.31540 8.53686 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.006532 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.273161 B = 4285.272012 C = 6077.051281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.305 6.305 3 C -0.066 4.066 4 C -0.050 4.050 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.155 4.155 8 C -0.106 4.106 9 C -0.176 4.176 10 C 0.164 3.836 11 N -0.687 5.687 12 C 0.527 3.473 13 O -0.601 6.601 14 C -0.565 4.565 15 H 0.089 0.911 16 C 0.031 3.969 17 N -0.812 5.812 18 Si 0.999 3.001 19 H -0.247 1.247 20 H -0.267 1.267 21 H -0.266 1.266 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.402 0.598 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -6.748 -12.754 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.079 6.079 3 C -0.214 4.214 4 C -0.088 4.088 5 C -0.146 4.146 6 C -0.104 4.104 7 C -0.174 4.174 8 C -0.124 4.124 9 C -0.197 4.197 10 C 0.066 3.934 11 N -0.329 5.329 12 C 0.334 3.666 13 O -0.487 6.487 14 C -0.600 4.600 15 H 0.108 0.892 16 C -0.185 4.185 17 N -0.441 5.441 18 Si 0.818 3.182 19 H -0.170 1.170 20 H -0.192 1.192 21 H -0.191 1.191 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.238 0.762 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.461 -6.878 -12.571 16.155 hybrid contribution -0.935 0.783 1.165 1.687 sum -8.396 -6.094 -11.405 15.418 Atomic orbital electron populations 1.23431 0.91246 1.07543 1.05746 1.86980 1.10702 1.12068 1.98179 1.23332 0.99207 0.93463 1.05366 1.20073 0.93325 0.91502 1.03931 1.19624 1.07557 0.95558 0.91874 1.21133 0.97669 0.94647 0.96959 1.21303 1.03308 0.94857 0.97949 1.21229 0.98899 1.00377 0.91940 1.21449 1.04746 0.94164 0.99328 1.18160 0.97240 0.91598 0.86446 1.43734 1.53144 1.30733 1.05308 1.18743 0.80283 0.83591 0.84004 1.90555 1.39201 1.32061 1.86894 1.21419 1.29721 1.18936 0.89960 0.89248 1.26984 0.92539 0.93987 1.05030 1.70147 1.23065 1.20753 1.30086 0.84942 0.79167 0.78992 0.75088 1.16955 1.19171 1.19110 0.90239 0.89187 0.86756 0.91271 0.88309 0.88275 0.92182 0.82610 0.83023 0.85207 0.87894 0.76212 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.76 113.37 1.22 -0.55 16 2 S -0.30 -7.07 22.38 -56.49 -1.26 -8.33 16 3 C -0.07 -1.57 5.84 71.98 0.42 -1.15 16 4 C -0.05 -1.37 4.72 29.85 0.14 -1.23 16 5 C -0.14 -4.61 5.15 -19.72 -0.10 -4.71 16 6 C -0.09 -2.31 9.67 22.25 0.22 -2.10 16 7 C -0.16 -4.31 10.04 22.31 0.22 -4.09 16 8 C -0.11 -3.73 10.04 22.25 0.22 -3.50 16 9 C -0.18 -7.98 8.71 22.42 0.20 -7.79 16 10 C 0.16 7.02 6.41 38.30 0.25 7.27 16 11 N -0.69 -32.15 4.97 -307.53 -1.53 -33.68 16 12 C 0.53 30.59 7.54 86.30 0.65 31.24 16 13 O -0.60 -39.56 12.17 -4.49 -0.05 -39.62 16 14 C -0.56 -31.67 9.54 24.79 0.24 -31.43 16 15 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 16 C 0.03 1.70 5.50 85.33 0.47 2.17 16 17 N -0.81 -48.75 11.82 21.85 0.26 -48.49 16 18 Si 1.00 40.20 29.56 68.60 2.03 42.23 16 19 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.84 7.44 -2.39 -0.02 1.82 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.10 2.30 8.05 -2.39 -0.02 2.29 16 28 H 0.06 1.91 7.27 -2.38 -0.02 1.89 16 29 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.10 5.66 5.78 -2.92 -0.02 5.64 16 33 H 0.40 16.47 6.74 -92.71 -0.62 15.85 16 34 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 Total: -1.00 -73.51 304.32 4.06 -69.45 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.49 Total: 34.33 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.14 Total: -15.88 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.27 Total: -82.17 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.05 Total: -39.62 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.26 Total: -8.33 kcal Total: -73.51 4.06 -69.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601718115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.604 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds