Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46825 * 2 1 4 4 C 1.46499 * 119.99666 * 90.00261 * 3 2 1 5 5 C 1.50705 * 109.47053 * 270.00028 * 4 3 2 6 6 H 1.08000 * 120.00265 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47322 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99644 * 9 7 5 12 12 H 1.48505 * 109.47315 * 239.99879 * 9 7 5 13 13 C 1.34775 * 120.00118 * 270.00185 * 3 2 1 14 14 O 1.21782 * 119.99881 * 179.97438 * 13 3 2 15 15 C 1.41479 * 120.00024 * 0.02562 * 13 3 2 16 16 C 1.35646 * 119.99473 * 186.70094 * 15 13 3 17 17 C 1.41580 * 120.00529 * 9.83941 * 16 15 13 18 18 C 1.37039 * 125.47586 * 224.63471 * 17 16 15 19 19 C 1.37431 * 113.22601 * 179.83594 * 18 17 16 20 20 C 1.33866 * 115.12487 * 0.45649 * 19 18 17 21 21 S 1.70606 * 111.01510 * 359.74548 * 20 19 18 22 22 H 1.09006 * 109.46675 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47093 * 299.99603 * 1 2 3 24 24 H 1.08999 * 109.47364 * 59.99893 * 1 2 3 25 25 H 1.08999 * 109.47093 * 240.00397 * 2 1 3 26 26 H 1.08999 * 109.47364 * 120.00107 * 2 1 3 27 27 H 1.08999 * 109.47267 * 29.99742 * 4 3 2 28 28 H 1.09001 * 109.47074 * 150.00088 * 4 3 2 29 29 H 0.96997 * 120.00018 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.99676 * 6.70280 * 15 13 3 31 31 H 1.08007 * 119.99500 * 189.82923 * 16 15 13 32 32 H 1.08006 * 123.38722 * 0.02562 * 18 17 16 33 33 H 1.08000 * 122.43850 * 180.18096 * 19 18 17 34 34 H 1.07998 * 124.49473 * 179.73055 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0065 2.7821 1.7039 6 1 0.1157 2.7253 1.0959 7 6 0.9951 3.5055 2.8777 8 7 2.0800 3.5752 3.6178 9 14 -0.5614 4.3865 3.4166 10 1 -1.6338 4.1536 2.4161 11 1 -0.9941 3.8636 4.7374 12 1 -0.2936 5.8432 3.5244 13 6 2.2429 2.0167 -1.1672 14 8 2.6483 3.1650 -1.1671 15 6 2.0065 1.3499 -2.3924 16 6 2.3595 1.9372 -3.5631 17 6 3.1473 3.1136 -3.5558 18 6 2.9219 4.2265 -4.3231 19 6 3.8416 5.2256 -4.1120 20 6 4.7924 4.9424 -3.2133 21 16 4.5763 3.3787 -2.5662 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5505 1.3451 2.0284 28 1 3.0643 2.7985 1.1384 29 1 2.0718 4.0838 4.4437 30 1 1.5451 0.3735 -2.3956 31 1 2.0397 1.5073 -4.5009 32 1 2.1022 4.3110 -5.0212 33 1 3.8028 6.1690 -4.6364 34 1 5.5907 5.6145 -2.9349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701157396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = 31.296756 kcal Electronic energy + Delta-G solvation = -17865.178578 eV Core-core repulsion = 15084.063282 eV Total energy + Delta-G solvation = -2781.115295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42965 -37.38676 -35.38355 -33.44776 -32.61130 -29.93153 -28.76474 -27.03104 -24.58174 -23.07203 -22.71683 -21.05667 -19.25318 -18.25794 -16.91650 -16.49194 -16.16110 -15.29369 -14.83783 -14.22576 -14.08218 -13.70954 -13.28226 -12.86989 -12.63195 -12.40197 -12.27163 -12.15444 -11.96924 -11.59515 -11.39529 -11.13873 -10.90513 -10.69103 -10.46820 -10.41049 -10.03371 -9.54707 -9.53843 -8.85337 -8.39806 -8.14956 -7.57489 -7.11314 -6.00562 -4.04094 0.73002 2.00951 2.36503 2.59841 3.17415 3.31096 3.38957 3.42989 4.01818 4.22637 4.48469 5.17924 5.23558 5.34382 5.41559 5.44965 5.69150 5.77023 5.80296 5.86645 5.90424 6.13946 6.20467 6.35974 6.41198 6.50784 6.76294 6.81349 6.89480 7.15753 7.49740 7.62735 7.96607 8.28710 8.49324 8.95607 9.16368 9.60459 11.07288 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.006586 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.391560 B = 4250.572395 C = 4967.474579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.521 3.479 14 O -0.527 6.527 15 C -0.208 4.208 16 C -0.007 4.007 17 C -0.193 4.193 18 C -0.121 4.121 19 C -0.155 4.155 20 C -0.276 4.276 21 S 0.291 5.709 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 -5.941 -13.917 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.310 3.690 14 O -0.408 6.408 15 C -0.232 4.232 16 C -0.028 4.028 17 C -0.311 4.311 18 C -0.152 4.152 19 C -0.188 4.188 20 C -0.414 4.414 21 S 0.563 5.437 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.708 -6.103 -12.606 14.489 hybrid contribution -1.946 1.520 -0.518 2.523 sum 1.762 -4.584 -13.125 14.013 Atomic orbital electron populations 1.22239 0.96362 1.00775 1.03453 1.21414 0.94557 0.83939 1.01526 1.48281 1.62861 1.12966 1.08025 1.19273 0.97516 0.92446 0.78144 1.21487 0.97517 1.30724 1.05955 0.92334 1.24929 0.96366 0.96350 0.96547 1.69939 1.27384 1.41849 1.14363 0.86496 0.83360 0.79617 0.78271 1.19851 1.21031 1.20975 1.17081 0.80142 0.87259 0.84468 1.90929 1.45164 1.17356 1.87351 1.22537 1.05546 1.01508 0.93632 1.20575 0.92619 0.91967 0.97680 1.22470 1.03871 0.99988 1.04783 1.20541 1.00564 0.92856 1.01240 1.19675 0.96794 1.00630 1.01668 1.25282 1.06408 1.05027 1.04721 1.82823 1.16548 1.08344 1.35964 0.92928 0.90640 0.93163 0.91904 0.90813 0.95241 0.93775 0.92895 0.85231 0.84905 0.84932 0.85591 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.23 37.16 0.38 -2.26 16 2 C 0.11 1.78 5.81 -4.04 -0.02 1.75 16 3 N -0.59 -12.49 2.46 -178.52 -0.44 -12.93 16 4 C 0.25 6.39 5.20 -5.19 -0.03 6.36 16 5 C -0.52 -14.65 8.92 -34.43 -0.31 -14.96 16 6 H 0.06 1.67 7.42 -52.49 -0.39 1.28 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.52 10.82 6.98 -15.03 -0.10 10.72 16 14 O -0.53 -12.71 11.13 5.12 0.06 -12.65 16 15 C -0.21 -3.30 9.01 -39.28 -0.35 -3.65 16 16 C -0.01 -0.10 9.89 -39.24 -0.39 -0.48 16 17 C -0.19 -3.17 4.62 -38.74 -0.18 -3.34 16 18 C -0.12 -1.86 10.25 -40.31 -0.41 -2.27 16 19 C -0.16 -2.36 10.15 -41.41 -0.42 -2.78 16 20 C -0.28 -4.35 10.92 29.20 0.32 -4.03 16 21 S 0.29 4.94 19.33 -107.50 -2.08 2.86 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.41 7.26 -51.93 -0.38 1.03 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 26 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 27 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.13 1.64 6.21 -52.49 -0.33 1.32 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -32.85 301.61 -8.10 -40.95 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.29 Total: -0.58 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.61 Total: -13.34 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.30 Total: -38.94 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.06 Total: -12.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.08 Total: 2.86 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.85 -8.10 -40.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701157396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.250 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds