Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46825 * 2 1 4 4 C 1.46499 * 119.99666 * 90.00261 * 3 2 1 5 5 C 1.50705 * 109.47053 * 270.00028 * 4 3 2 6 6 H 1.08000 * 120.00265 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47322 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99644 * 9 7 5 12 12 H 1.48505 * 109.47315 * 239.99879 * 9 7 5 13 13 C 1.34775 * 120.00118 * 270.00185 * 3 2 1 14 14 O 1.21782 * 119.99881 * 179.97438 * 13 3 2 15 15 C 1.41479 * 120.00024 * 0.02562 * 13 3 2 16 16 C 1.35646 * 119.99473 * 186.70094 * 15 13 3 17 17 C 1.41580 * 120.00529 * 9.83941 * 16 15 13 18 18 C 1.37039 * 125.47586 * 224.63471 * 17 16 15 19 19 C 1.37431 * 113.22601 * 179.83594 * 18 17 16 20 20 C 1.33866 * 115.12487 * 0.45649 * 19 18 17 21 21 S 1.70606 * 111.01510 * 359.74548 * 20 19 18 22 22 H 1.09006 * 109.46675 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47093 * 299.99603 * 1 2 3 24 24 H 1.08999 * 109.47364 * 59.99893 * 1 2 3 25 25 H 1.08999 * 109.47093 * 240.00397 * 2 1 3 26 26 H 1.08999 * 109.47364 * 120.00107 * 2 1 3 27 27 H 1.08999 * 109.47267 * 29.99742 * 4 3 2 28 28 H 1.09001 * 109.47074 * 150.00088 * 4 3 2 29 29 H 0.96997 * 120.00018 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.99676 * 6.70280 * 15 13 3 31 31 H 1.08007 * 119.99500 * 189.82923 * 16 15 13 32 32 H 1.08006 * 123.38722 * 0.02562 * 18 17 16 33 33 H 1.08000 * 122.43850 * 180.18096 * 19 18 17 34 34 H 1.07998 * 124.49473 * 179.73055 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0065 2.7821 1.7039 6 1 0.1157 2.7253 1.0959 7 6 0.9951 3.5055 2.8777 8 7 2.0800 3.5752 3.6178 9 14 -0.5614 4.3865 3.4166 10 1 -1.6338 4.1536 2.4161 11 1 -0.9941 3.8636 4.7374 12 1 -0.2936 5.8432 3.5244 13 6 2.2429 2.0167 -1.1672 14 8 2.6483 3.1650 -1.1671 15 6 2.0065 1.3499 -2.3924 16 6 2.3595 1.9372 -3.5631 17 6 3.1473 3.1136 -3.5558 18 6 2.9219 4.2265 -4.3231 19 6 3.8416 5.2256 -4.1120 20 6 4.7924 4.9424 -3.2133 21 16 4.5763 3.3787 -2.5662 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5505 1.3451 2.0284 28 1 3.0643 2.7985 1.1384 29 1 2.0718 4.0838 4.4437 30 1 1.5451 0.3735 -2.3956 31 1 2.0397 1.5073 -4.5009 32 1 2.1022 4.3110 -5.0212 33 1 3.8028 6.1690 -4.6364 34 1 5.5907 5.6145 -2.9349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701157396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = 11.624074 kcal Electronic energy + Delta-G solvation = -17866.031649 eV Core-core repulsion = 15084.063282 eV Total energy + Delta-G solvation = -2781.968367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95260 -38.61470 -36.97048 -34.98319 -34.47701 -31.47169 -30.18728 -28.77644 -26.07370 -24.67851 -24.13918 -22.51636 -20.45456 -19.66065 -18.67083 -18.29607 -17.60641 -16.75419 -16.50153 -15.86847 -15.62377 -15.04078 -14.60870 -14.45737 -14.11439 -13.80211 -13.70319 -13.50945 -13.29780 -13.25364 -12.88510 -12.81206 -12.71475 -12.46994 -12.15663 -11.75165 -11.63586 -11.58869 -10.84084 -10.62339 -10.34391 -9.60017 -8.99648 -8.53044 -8.18348 -6.32316 -0.49541 0.80213 1.13492 1.33644 1.35992 1.37403 1.47553 1.97053 2.32995 2.57718 2.73081 3.09436 4.00536 4.06862 4.25820 4.27757 4.52247 4.56084 4.65330 4.67370 4.76791 4.94966 5.03262 5.05484 5.09111 5.23968 5.30755 5.42531 5.53921 5.55786 5.64596 5.75657 5.95394 6.12179 6.75880 6.91999 7.32919 7.60775 8.87108 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.006586 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.391560 B = 4250.572395 C = 4967.474579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.103 3.897 3 N -0.601 5.601 4 C 0.264 3.736 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.511 3.489 14 O -0.572 6.572 15 C -0.226 4.226 16 C 0.017 3.983 17 C -0.208 4.208 18 C -0.122 4.122 19 C -0.161 4.161 20 C -0.284 4.284 21 S 0.232 5.768 22 H 0.091 0.909 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.017 0.983 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -6.798 -16.095 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.332 5.332 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.195 1.195 12 H -0.210 1.210 13 C 0.303 3.697 14 O -0.456 6.456 15 C -0.250 4.250 16 C -0.004 4.004 17 C -0.327 4.327 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.422 4.422 21 S 0.504 5.496 22 H 0.110 0.890 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.035 0.965 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.912 -7.002 -14.802 16.486 hybrid contribution -1.317 1.843 0.075 2.266 sum 0.595 -5.160 -14.727 15.616 Atomic orbital electron populations 1.22155 0.95605 1.02706 1.01564 1.21740 0.95129 0.81446 1.03599 1.48269 1.63623 1.14769 1.06488 1.18673 0.95332 0.91402 0.80412 1.21719 0.97885 1.30958 1.05994 0.92994 1.25805 0.99597 0.97150 0.96709 1.70056 1.29416 1.42702 1.14855 0.85466 0.79478 0.78065 0.78397 1.19298 1.19459 1.21011 1.17934 0.78932 0.87081 0.85724 1.90919 1.47038 1.19545 1.88066 1.22488 1.07941 1.03216 0.91329 1.21134 0.89853 0.90257 0.99204 1.22836 1.03944 1.01556 1.04348 1.20970 1.01016 0.92273 1.01085 1.20090 0.96233 1.01728 1.01271 1.25525 1.07394 1.04389 1.04872 1.83024 1.18678 1.10146 1.37718 0.89022 0.94547 0.92930 0.87612 0.90941 0.96519 0.98277 0.92634 0.81556 0.79824 0.82014 0.83028 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 10.23 71.98 0.74 -3.98 16 2 C 0.10 3.18 5.81 86.38 0.50 3.68 16 3 N -0.60 -25.74 2.46 -836.88 -2.06 -27.80 16 4 C 0.26 14.39 5.20 85.64 0.45 14.83 16 5 C -0.53 -30.72 8.92 25.60 0.23 -30.49 16 6 H 0.05 3.03 7.42 -2.91 -0.02 3.01 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 C 0.51 21.22 6.98 85.04 0.59 21.82 16 14 O -0.57 -28.38 11.13 -4.61 -0.05 -28.43 16 15 C -0.23 -6.57 9.01 22.47 0.20 -6.37 16 16 C 0.02 0.42 9.89 22.49 0.22 0.64 16 17 C -0.21 -6.51 4.62 22.81 0.11 -6.40 16 18 C -0.12 -3.47 10.25 21.80 0.22 -3.24 16 19 C -0.16 -4.63 10.15 21.08 0.21 -4.42 16 20 C -0.28 -8.90 10.92 66.83 0.73 -8.17 16 21 S 0.23 8.05 19.33 -56.49 -1.09 6.96 16 22 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 23 H 0.04 1.33 7.26 -2.39 -0.02 1.31 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.11 2.37 6.18 -2.39 -0.01 2.35 16 26 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 27 H 0.02 0.94 7.89 -2.39 -0.02 0.92 16 28 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.17 3.46 6.21 -2.91 -0.02 3.45 16 31 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 34 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -75.12 301.61 4.87 -70.25 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.09 Total: 9.14 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.67 Total: -21.30 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.77 Total: -84.69 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.09 Total: 6.96 kcal Total: -75.12 4.87 -70.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701157396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.873 kcal (2) G-P(sol) polarization free energy of solvation -75.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds