Wall clock time and date at job start Mon Mar 30 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86805 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46910 * 240.00078 * 3 2 1 5 5 H 1.48495 * 109.46784 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 119.99947 * 3 2 1 7 7 C 1.40274 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.40371 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.33062 * 126.31636 * 179.97438 * 9 7 2 11 11 C 1.32229 * 109.80213 * 179.97438 * 10 9 7 12 12 C 1.50702 * 125.15763 * 180.02562 * 11 10 9 13 13 C 1.52463 * 108.78863 * 28.30128 * 12 11 10 14 14 C 1.54743 * 109.28595 * 57.46472 * 13 12 11 15 15 H 1.08994 * 114.19664 * 196.70293 * 14 13 12 16 16 C 1.54963 * 105.19737 * 322.91878 * 14 13 12 17 17 C 1.52446 * 111.72617 * 81.07891 * 16 14 13 18 18 C 1.54973 * 111.72053 * 0.02562 * 17 16 14 19 19 H 1.08993 * 114.37005 * 152.22406 * 18 17 16 20 20 C 1.52467 * 108.78739 * 151.70022 * 12 11 10 21 21 S 1.84400 * 105.03158 * 69.99492 * 14 13 12 22 22 N 1.31392 * 109.68265 * 0.02562 * 11 10 9 23 23 N 1.37024 * 126.31691 * 359.97438 * 9 7 2 24 24 H 0.96997 * 127.01441 * 0.02562 * 23 9 7 25 25 H 0.97002 * 119.99629 * 0.02562 * 1 2 3 26 26 H 1.08995 * 108.76125 * 269.94538 * 12 11 10 27 27 H 1.09004 * 109.49814 * 177.40693 * 13 12 11 28 28 H 1.08997 * 109.50222 * 297.48378 * 13 12 11 29 29 H 1.09011 * 109.03839 * 201.67499 * 16 14 13 30 30 H 1.09000 * 109.04366 * 320.59881 * 16 14 13 31 31 H 1.09001 * 109.04403 * 120.59205 * 17 16 14 32 32 H 1.08996 * 109.04515 * 239.40524 * 17 16 14 33 33 H 1.08994 * 109.50297 * 62.47349 * 20 12 11 34 34 H 1.08996 * 109.49833 * 182.59666 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6963 -1.2125 5 1 1.2756 2.7464 -0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0078 -1.2148 0.0005 8 1 3.0878 -1.2148 0.0010 9 6 1.3059 -2.4304 0.0005 10 7 1.8404 -3.6490 0.0005 11 6 0.8809 -4.5589 0.0011 12 6 1.0992 -6.0501 0.0018 13 6 2.4278 -6.3516 0.6862 14 6 2.4084 -5.7685 2.1194 15 1 3.3928 -5.6792 2.5787 16 6 1.6331 -4.4317 2.0037 17 6 0.1247 -4.6523 2.0039 18 6 -0.2351 -6.1552 2.1205 19 1 -1.1992 -6.3518 2.5893 20 6 -0.0872 -6.7196 0.6866 21 16 1.2126 -6.8213 3.0479 22 7 -0.2915 -3.9658 0.0009 23 7 -0.0560 -2.5811 0.0005 24 1 -0.7216 -1.8756 0.0002 25 1 -0.4850 0.8401 -0.0004 26 1 1.1488 -6.3976 -1.0300 27 1 2.5757 -7.4305 0.7342 28 1 3.2405 -5.8977 0.1191 29 1 1.8991 -3.7923 2.8455 30 1 1.9179 -3.9346 1.0764 31 1 -0.3131 -4.1160 2.8458 32 1 -0.2927 -4.2573 1.0778 33 1 -0.9961 -6.5170 0.1202 34 1 0.0802 -7.7956 0.7347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716063135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:10 Heat of formation + Delta-G solvation = 287.483517 kcal Electronic energy + Delta-G solvation = -19355.350814 eV Core-core repulsion = 16617.637361 eV Total energy + Delta-G solvation = -2737.713453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.73089 -37.56724 -34.27967 -32.94790 -30.92750 -30.49843 -30.18555 -26.85165 -24.44432 -23.41896 -21.70847 -20.74978 -18.65454 -18.47778 -18.22131 -16.51965 -16.30388 -15.68116 -15.15862 -14.69121 -13.67163 -13.27962 -12.82251 -12.62787 -12.46317 -12.29716 -12.05991 -11.93202 -11.68979 -11.36514 -11.23384 -10.90176 -10.82205 -10.67122 -10.53677 -9.93323 -9.82410 -9.63958 -9.47156 -8.98236 -8.79972 -7.48654 -7.07142 -6.68431 -6.52042 -4.84665 2.51298 2.72140 2.83030 2.87014 2.93153 3.14128 3.46107 3.54762 4.18442 4.72772 4.98266 5.24097 5.28814 5.53818 5.59934 5.78764 5.95190 6.08020 6.10254 6.27468 6.31028 6.44711 6.48763 6.63299 6.66410 6.72434 6.83152 7.03649 7.08666 7.38028 7.42634 7.61789 7.93619 8.13906 8.33435 8.82163 8.97124 9.44468 9.62965 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037384 B = 0.006695 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.812759 B = 4181.446972 C = 4325.087926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.074 3.926 3 Si 0.947 3.053 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.111 0.889 9 C 0.401 3.599 10 N -0.578 5.578 11 C 0.292 3.708 12 C 0.000 4.000 13 C -0.096 4.096 14 C 0.008 3.992 15 H 0.100 0.900 16 C -0.357 4.357 17 C -0.329 4.329 18 C 0.000 4.000 19 H 0.098 0.902 20 C -0.101 4.101 21 S -0.415 6.415 22 N -0.348 5.348 23 N -0.528 5.528 24 H 0.447 0.553 25 H 0.300 0.700 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.023 0.977 30 H 0.297 0.703 31 H 0.014 0.986 32 H 0.269 0.731 33 H 0.077 0.923 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -2.183 -3.140 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.146 4.146 3 Si 0.770 3.230 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.450 4.450 8 H 0.129 0.871 9 C 0.159 3.841 10 N -0.315 5.315 11 C 0.022 3.978 12 C -0.021 4.021 13 C -0.136 4.136 14 C -0.119 4.119 15 H 0.118 0.882 16 C -0.394 4.394 17 C -0.366 4.366 18 C -0.128 4.128 19 H 0.117 0.883 20 C -0.141 4.141 21 S -0.186 6.186 22 N -0.177 5.177 23 N -0.256 5.256 24 H 0.303 0.697 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.293 0.707 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.472 -3.328 -2.351 4.102 hybrid contribution -0.280 1.665 0.868 1.898 sum 0.192 -1.664 -1.483 2.237 Atomic orbital electron populations 1.68690 1.08170 1.31624 1.36100 1.26156 0.94999 1.02839 0.90648 0.85669 0.79479 0.77237 0.80585 1.18188 1.19934 1.18282 1.18830 0.95934 0.86179 1.44067 0.87088 1.20530 0.81333 0.92232 0.89983 1.67343 1.31445 0.98427 1.34272 1.22564 0.87131 0.96631 0.91467 1.19497 0.95801 0.86554 1.00208 1.21891 0.96655 0.99968 0.95109 1.24463 0.97827 0.95672 0.93973 0.88218 1.29212 0.92777 0.97543 1.19844 1.29306 0.97042 0.93507 1.16760 1.24478 0.95172 0.98796 0.94374 0.88345 1.21924 0.97978 0.99204 0.94999 1.87542 1.12333 1.59904 1.58868 1.73954 1.22914 0.91328 1.29539 1.48326 1.07876 1.02713 1.66683 0.69718 0.88830 0.89075 0.91421 0.89880 0.95830 0.70656 0.96667 0.73277 0.90488 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -17.19 10.72 55.56 0.60 -16.59 16 2 C 0.07 1.53 5.50 -17.29 -0.10 1.44 16 3 Si 0.95 15.79 29.56 -169.99 -5.03 10.77 16 4 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 5 H -0.27 -4.47 7.11 56.52 0.40 -4.07 16 6 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 7 C -0.41 -9.30 9.47 -38.01 -0.36 -9.66 16 8 H 0.11 2.38 7.85 -52.49 -0.41 1.97 16 9 C 0.40 9.49 6.87 -155.88 -1.07 8.42 16 10 N -0.58 -13.12 7.76 -57.80 -0.45 -13.57 16 11 C 0.29 6.21 4.00 -157.16 -0.63 5.58 16 12 C 0.00 0.00 2.94 -92.32 -0.27 -0.27 16 13 C -0.10 -1.70 5.04 -26.09 -0.13 -1.83 16 14 C 0.01 0.17 4.87 -24.78 -0.12 0.05 16 15 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 16 C -0.36 -8.37 4.66 -25.98 -0.12 -8.49 16 17 C -0.33 -7.63 4.86 -25.97 -0.13 -7.75 16 18 C 0.00 -0.01 4.88 -24.74 -0.12 -0.13 16 19 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 20 C -0.10 -1.76 5.05 -26.05 -0.13 -1.89 16 21 S -0.42 -8.78 21.98 -107.50 -2.36 -11.15 16 22 N -0.35 -7.68 8.94 -8.37 -0.07 -7.76 16 23 N -0.53 -12.17 6.88 31.10 0.21 -11.95 16 24 H 0.45 10.12 6.38 -182.33 -1.16 8.96 16 25 H 0.30 5.69 8.29 -40.82 -0.34 5.35 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 29 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.30 6.85 0.98 -186.80 -0.18 6.66 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.06 1.12 -318.60 -0.36 5.71 16 33 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 34 H 0.07 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 262.78 15.07 3.96 3.96 Total: -1.00 -25.33 262.78 -11.35 -36.68 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -5.03 Total: 24.13 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.18 Total: -14.53 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.29 Total: -49.87 kcal Atomic # 14 Polarization: 15.79 SS G_CDS: -5.03 Total: 10.77 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -2.36 Total: -11.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.33 -11.35 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716063135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 324.162 kcal (2) G-P(sol) polarization free energy of solvation -25.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 298.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 287.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds