Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31076 * 1 3 3 Si 1.86806 * 119.99776 * 2 1 4 4 H 1.48504 * 109.46940 * 274.11501 * 3 2 1 5 5 H 1.48501 * 109.46821 * 34.11336 * 3 2 1 6 6 H 1.48498 * 109.47293 * 154.11656 * 3 2 1 7 7 C 1.39754 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00312 * 190.94160 * 7 2 1 9 9 C 1.40586 * 119.99724 * 10.94290 * 7 2 1 10 10 C 1.41341 * 126.68896 * 6.65984 * 9 7 2 11 11 N 1.30544 * 108.77523 * 180.02562 * 10 9 7 12 12 N 1.39906 * 109.89520 * 0.02562 * 11 10 9 13 13 C 1.36769 * 132.00287 * 180.02562 * 12 11 10 14 14 C 1.35483 * 119.21797 * 179.73278 * 13 12 11 15 15 C 1.41074 * 119.24529 * 0.50369 * 14 13 12 16 16 C 1.48006 * 120.05069 * 179.76860 * 15 14 13 17 17 C 1.39555 * 120.13948 * 359.44673 * 16 15 14 18 18 C 1.37951 * 119.85602 * 180.25658 * 17 16 15 19 19 C 1.38373 * 120.14206 * 0.03990 * 18 17 16 20 20 C 1.38371 * 120.28543 * 359.95865 * 19 18 17 21 21 C 1.37956 * 120.14301 * 0.02562 * 20 19 18 22 22 N 1.32652 * 119.89563 * 359.48758 * 15 14 13 23 23 C 1.32603 * 120.82613 * 0.25795 * 22 15 14 24 24 H 0.96996 * 120.00442 * 359.97438 * 1 2 3 25 25 H 1.08001 * 125.60979 * 0.02562 * 10 9 7 26 26 H 1.07999 * 120.38621 * 359.97438 * 13 12 11 27 27 H 1.08004 * 120.37960 * 180.26852 * 14 13 12 28 28 H 1.07997 * 120.07853 * 0.27410 * 17 16 15 29 29 H 1.08002 * 119.93325 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.85934 * 179.97438 * 19 18 17 31 31 H 1.07997 * 119.93241 * 180.02562 * 20 19 18 32 32 H 1.07995 * 120.07542 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4052 2.0967 -1.3965 5 1 1.4883 2.6260 0.7852 6 1 3.5831 1.4168 0.6112 7 6 2.0096 -1.2102 -0.0005 8 1 3.0749 -1.2188 0.1770 9 6 1.3259 -2.4166 -0.2322 10 6 -0.0293 -2.5607 -0.6070 11 7 -0.2989 -3.8323 -0.7277 12 7 0.8424 -4.5900 -0.4440 13 6 1.0659 -5.9393 -0.4334 14 6 2.2995 -6.4029 -0.1192 15 6 3.3208 -5.4833 0.1997 16 6 4.6736 -5.9704 0.5506 17 6 4.9400 -7.3401 0.5782 18 6 6.2016 -7.7878 0.9112 19 6 7.2017 -6.8821 1.2182 20 6 6.9442 -5.5228 1.1926 21 6 5.6868 -5.0621 0.8609 22 7 3.0681 -4.1813 0.1792 23 6 1.8618 -3.7280 -0.1334 24 1 -0.4850 0.8400 0.0004 25 1 -0.7268 -1.7519 -0.7672 26 1 0.2693 -6.6269 -0.6764 27 1 2.4979 -7.4645 -0.1093 28 1 4.1602 -8.0480 0.3392 29 1 6.4092 -8.8474 0.9326 30 1 8.1877 -7.2377 1.4786 31 1 7.7291 -4.8210 1.4328 32 1 5.4871 -4.0010 0.8408 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725389248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = 116.581738 kcal Electronic energy + Delta-G solvation = -18377.390498 eV Core-core repulsion = 15496.822237 eV Total energy + Delta-G solvation = -2880.568261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.41272 -40.04188 -38.21828 -35.90455 -34.19700 -32.90620 -31.77061 -30.69527 -30.17311 -26.92191 -25.50526 -24.06758 -22.82582 -22.33720 -21.81640 -19.47917 -18.26441 -18.10639 -17.46896 -16.69134 -16.37690 -16.27454 -15.46899 -15.22497 -14.87507 -14.68981 -14.24781 -14.05616 -13.84850 -13.56267 -13.35567 -12.97032 -12.94497 -12.83807 -12.18088 -12.02605 -11.91716 -11.86442 -11.42951 -11.07688 -10.38473 -10.35592 -9.76622 -9.35086 -8.93030 -8.74292 -6.01735 -0.39646 0.35501 0.60092 0.82862 1.38536 1.40867 1.53975 1.80009 2.09810 2.20140 2.61768 3.11117 3.28015 3.40303 3.67099 3.89115 4.14212 4.22669 4.24759 4.44886 4.56353 4.71668 4.76568 4.79502 4.89084 5.03343 5.12720 5.24999 5.29996 5.48339 5.67669 5.68837 5.76145 5.79160 6.16271 6.18844 6.28413 6.52761 6.76416 7.09465 7.33959 8.25202 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005692 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.523191 B = 4917.607572 C = 6232.623262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.423 4.423 8 H 0.072 0.928 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.322 5.322 12 N -0.354 5.354 13 C 0.114 3.886 14 C -0.204 4.204 15 C 0.105 3.895 16 C -0.045 4.045 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.119 4.119 22 N -0.432 5.432 23 C 0.063 3.937 24 H 0.297 0.703 25 H 0.208 0.792 26 H 0.193 0.807 27 H 0.194 0.806 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -11.028 1.179 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.454 4.454 8 H 0.090 0.910 9 C -0.025 4.025 10 C -0.160 4.160 11 N -0.146 5.146 12 N -0.137 5.137 13 C -0.015 4.015 14 C -0.228 4.228 15 C -0.056 4.056 16 C -0.045 4.045 17 C -0.127 4.127 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.139 4.139 22 N -0.142 5.142 23 C -0.162 4.162 24 H 0.108 0.892 25 H 0.224 0.776 26 H 0.210 0.790 27 H 0.211 0.789 28 H 0.167 0.833 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.580 -10.817 1.061 13.847 hybrid contribution -0.149 1.115 -0.026 1.125 sum 8.431 -9.702 1.036 12.895 Atomic orbital electron populations 1.69582 1.08623 1.31241 1.35935 1.26800 0.95837 1.04404 0.91567 0.84930 0.78595 0.75009 0.79622 1.18376 1.18358 1.18900 1.19037 0.95818 0.90258 1.40317 0.90982 1.18107 0.92913 0.90224 1.01220 1.24705 0.97313 0.92603 1.01359 1.76625 1.06012 1.05222 1.26765 1.46329 1.09211 1.05896 1.52228 1.22199 0.99612 0.81324 0.98339 1.21617 0.91028 1.02575 1.07616 1.20181 0.95145 0.87775 1.02503 1.18577 0.89954 0.94625 1.01388 1.21476 0.98763 0.92932 0.99531 1.21453 0.92034 1.01345 0.98734 1.21615 1.00700 0.92407 0.98944 1.21329 0.95841 0.97258 1.00195 1.21359 0.93902 0.99398 0.99256 1.67259 1.17908 1.17141 1.11907 1.20135 0.86232 0.91996 1.17855 0.89190 0.77614 0.78959 0.78932 0.83278 0.82257 0.82903 0.84483 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.32 10.55 21.81 0.23 -41.09 16 2 C 0.03 1.39 5.45 85.17 0.46 1.86 16 3 Si 1.00 38.24 29.57 68.60 2.03 40.27 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.42 -23.84 9.36 23.21 0.22 -23.62 16 8 H 0.07 4.11 7.87 -2.91 -0.02 4.09 16 9 C -0.01 -0.80 5.93 -21.01 -0.12 -0.93 16 10 C 0.02 1.19 10.83 85.65 0.93 2.12 16 11 N -0.32 -16.89 12.55 -56.19 -0.70 -17.59 16 12 N -0.35 -17.75 3.89 -190.85 -0.74 -18.49 16 13 C 0.11 4.34 11.30 83.29 0.94 5.28 16 14 C -0.20 -6.90 9.41 22.33 0.21 -6.69 16 15 C 0.11 4.34 6.77 42.31 0.29 4.63 16 16 C -0.04 -1.52 5.88 -20.05 -0.12 -1.64 16 17 C -0.11 -2.61 9.43 22.52 0.21 -2.40 16 18 C -0.12 -2.26 10.03 22.23 0.22 -2.03 16 19 C -0.12 -2.34 10.04 22.33 0.22 -2.12 16 20 C -0.13 -3.29 10.03 22.23 0.22 -3.07 16 21 C -0.12 -4.10 9.59 22.52 0.22 -3.88 16 22 N -0.43 -22.20 9.55 -180.18 -1.72 -23.92 16 23 C 0.06 3.47 7.92 134.37 1.06 4.53 16 24 H 0.30 13.13 8.30 -92.71 -0.77 12.36 16 25 H 0.21 11.08 5.98 -2.91 -0.02 11.06 16 26 H 0.19 5.50 8.06 -2.91 -0.02 5.47 16 27 H 0.19 4.27 6.25 -2.91 -0.02 4.25 16 28 H 0.15 2.72 6.22 -2.91 -0.02 2.71 16 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.10 4.03 7.55 -2.91 -0.02 4.01 16 Total: -1.00 -70.30 283.80 5.22 -65.08 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 1.16 Total: 23.69 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.97 Total: -27.96 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -2.94 Total: -101.09 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -70.30 5.22 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725389248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.666 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds