Wall clock time and date at job start Mon Mar 30 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47785 * 2 1 4 4 C 1.50703 * 109.47221 * 239.99547 * 2 1 3 5 5 H 1.07992 * 120.00370 * 239.99965 * 4 2 1 6 6 C 1.37881 * 119.99442 * 60.00677 * 4 2 1 7 7 N 1.31507 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99539 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47486 * 59.99878 * 8 6 4 10 10 H 1.48507 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47475 * 299.99379 * 8 6 4 12 12 O 1.42904 * 109.46796 * 120.00015 * 2 1 3 13 13 C 1.34902 * 117.00198 * 269.99246 * 12 2 1 14 14 O 1.21628 * 119.99884 * 0.02562 * 13 12 2 15 15 C 1.46233 * 120.00470 * 179.97438 * 13 12 2 16 16 C 1.34909 * 120.00392 * 173.22396 * 15 13 12 17 17 C 1.47184 * 120.00018 * 349.09654 * 16 15 13 18 18 C 1.39853 * 120.57593 * 136.55934 * 17 16 15 19 19 N 1.31615 * 120.58073 * 180.02562 * 18 17 16 20 20 C 1.31959 * 121.93320 * 0.02562 * 19 18 17 21 21 C 1.38583 * 121.10384 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.35354 * 180.02562 * 21 20 19 23 23 C 1.38531 * 119.28713 * 359.76530 * 21 20 19 24 24 H 1.09008 * 109.46929 * 59.99648 * 1 2 3 25 25 H 1.08996 * 109.47606 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46994 * 300.00418 * 1 2 3 27 27 H 0.97003 * 120.00267 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.99443 * 353.23087 * 15 13 12 29 29 H 1.07995 * 120.00423 * 169.09199 * 16 15 13 30 30 H 1.08003 * 119.71150 * 0.02646 * 18 17 16 31 31 H 1.07997 * 119.44752 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.87946 * 180.27275 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 8 2.0062 -0.6737 1.1668 13 6 2.2105 0.0786 2.2679 14 8 1.9894 1.2742 2.2371 15 6 2.6967 -0.5436 3.4987 16 6 3.0311 0.2243 4.5563 17 6 3.1384 1.6840 4.4012 18 6 2.6031 2.5432 5.3662 19 7 2.6985 3.8485 5.2274 20 6 3.2946 4.3979 4.1862 21 6 3.8511 3.6173 3.1855 22 9 4.4584 4.1958 2.1263 23 6 3.7829 2.2373 3.2856 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7083 1.1609 -3.4844 28 1 2.7881 -1.6179 3.5610 29 1 3.2200 -0.2320 5.5167 30 1 2.1070 2.1320 6.2329 31 1 3.3504 5.4740 4.1130 32 1 4.2118 1.6043 2.5229 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759344081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:26 Heat of formation + Delta-G solvation = -72.071634 kcal Electronic energy + Delta-G solvation = -19570.837237 eV Core-core repulsion = 16219.026375 eV Total energy + Delta-G solvation = -3351.810861 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.76733 -40.32571 -39.32195 -36.31648 -34.16836 -33.28561 -31.56887 -30.32124 -29.41912 -25.41562 -25.08545 -23.54938 -22.72875 -20.72230 -19.21334 -17.82323 -17.15930 -16.99717 -16.67886 -16.40952 -15.66063 -15.27005 -14.97499 -14.52156 -14.18068 -13.70882 -13.42498 -13.15097 -13.07233 -12.70077 -12.20763 -12.17910 -11.79622 -11.29999 -11.11395 -10.92191 -10.68717 -10.40490 -10.29195 -9.86359 -9.59804 -9.53418 -9.04299 -8.86267 -8.51183 -8.48212 -6.20543 -4.28309 0.45787 1.15179 1.68708 3.24464 3.28051 3.30186 3.40548 3.65887 3.70950 4.11245 4.31413 4.44489 4.56510 4.81139 4.86953 5.11743 5.13858 5.33371 5.50572 5.72367 5.88435 5.91218 6.04637 6.32176 6.59627 6.66781 6.85148 6.87482 7.09837 7.55590 7.68489 7.82670 7.88021 8.10151 8.56621 8.84213 9.37612 10.86772 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.005321 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.319067 B = 5261.236232 C = 5812.928524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.342 6.342 13 C 0.471 3.529 14 O -0.511 6.511 15 C -0.159 4.159 16 C -0.040 4.040 17 C -0.091 4.091 18 C 0.102 3.898 19 N -0.468 5.468 20 C 0.078 3.922 21 C 0.043 3.957 22 F -0.131 7.131 23 C -0.033 4.033 24 H 0.098 0.902 25 H 0.036 0.964 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 0.629 14.463 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.159 3.841 3 H 0.062 0.938 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.257 6.257 13 C 0.317 3.683 14 O -0.403 6.403 15 C -0.178 4.178 16 C -0.059 4.059 17 C -0.093 4.093 18 C -0.055 4.055 19 N -0.176 5.176 20 C -0.080 4.080 21 C 0.021 3.979 22 F -0.109 7.109 23 C -0.059 4.059 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.453 1.656 14.834 15.576 hybrid contribution 0.518 -0.842 -1.923 2.162 sum 4.971 0.814 12.911 13.859 Atomic orbital electron populations 1.22181 0.97682 1.00054 1.01377 1.20248 0.91472 0.94128 0.78266 0.93765 1.20980 1.32715 1.13530 0.88888 0.91387 1.24892 0.94867 0.95055 0.99097 1.69887 1.35856 1.22501 1.24323 0.86333 0.79220 0.79550 0.81028 1.19909 1.20995 1.19968 1.86198 1.75291 1.43253 1.20987 1.21357 0.75973 0.85541 0.85414 1.90868 1.48904 1.16075 1.84500 1.22657 1.02310 1.01427 0.91371 1.22251 0.94584 0.90905 0.98159 1.19770 0.99753 0.94585 0.95198 1.22886 0.96532 0.88264 0.97854 1.67596 1.14659 1.13399 1.21911 1.22837 0.95047 1.00767 0.89376 1.18573 0.99999 0.91930 0.87361 1.91531 1.80747 1.84435 1.54215 1.21688 0.95064 0.93402 0.95747 0.88328 0.94460 0.96624 0.92309 0.83439 0.83245 0.82097 0.81949 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.31 37.16 0.35 -3.61 16 2 C 0.21 5.65 2.51 -27.88 -0.07 5.58 16 3 H 0.04 1.31 7.11 -51.93 -0.37 0.94 16 4 C -0.52 -14.64 8.89 -34.44 -0.31 -14.95 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.91 21.07 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 O -0.34 -7.95 9.75 -41.05 -0.40 -8.35 16 13 C 0.47 9.31 6.92 33.94 0.23 9.55 16 14 O -0.51 -11.24 11.37 -19.36 -0.22 -11.46 16 15 C -0.16 -2.14 10.06 -37.55 -0.38 -2.52 16 16 C -0.04 -0.44 9.84 -37.13 -0.37 -0.80 16 17 C -0.09 -1.23 4.55 -104.92 -0.48 -1.71 16 18 C 0.10 1.28 10.96 -17.04 -0.19 1.09 16 19 N -0.47 -6.60 10.34 -12.78 -0.13 -6.74 16 20 C 0.08 1.10 11.16 -17.37 -0.19 0.90 16 21 C 0.04 0.68 7.33 -39.35 -0.29 0.39 16 22 F -0.13 -2.19 17.28 2.25 0.04 -2.15 16 23 C -0.03 -0.52 6.71 -38.73 -0.26 -0.78 16 24 H 0.10 2.70 6.07 -51.92 -0.32 2.38 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.14 2.34 7.10 -52.48 -0.37 1.97 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -31.91 289.37 -5.92 -37.84 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.14 Total: 0.41 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.04 Total: -5.21 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.50 Total: -31.49 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.62 Total: -19.81 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.91 -5.92 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759344081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.232 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds