Wall clock time and date at job start Mon Mar 30 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47785 * 2 1 4 4 C 1.50703 * 109.47221 * 239.99547 * 2 1 3 5 5 H 1.07992 * 120.00370 * 239.99965 * 4 2 1 6 6 C 1.37881 * 119.99442 * 60.00677 * 4 2 1 7 7 N 1.31507 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99539 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47486 * 59.99878 * 8 6 4 10 10 H 1.48507 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47475 * 299.99379 * 8 6 4 12 12 O 1.42904 * 109.46796 * 120.00015 * 2 1 3 13 13 C 1.34902 * 117.00198 * 269.99246 * 12 2 1 14 14 O 1.21628 * 119.99884 * 0.02562 * 13 12 2 15 15 C 1.46233 * 120.00470 * 179.97438 * 13 12 2 16 16 C 1.34909 * 120.00392 * 173.22396 * 15 13 12 17 17 C 1.47184 * 120.00018 * 349.09654 * 16 15 13 18 18 C 1.39853 * 120.57593 * 136.55934 * 17 16 15 19 19 N 1.31615 * 120.58073 * 180.02562 * 18 17 16 20 20 C 1.31959 * 121.93320 * 0.02562 * 19 18 17 21 21 C 1.38583 * 121.10384 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.35354 * 180.02562 * 21 20 19 23 23 C 1.38531 * 119.28713 * 359.76530 * 21 20 19 24 24 H 1.09008 * 109.46929 * 59.99648 * 1 2 3 25 25 H 1.08996 * 109.47606 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46994 * 300.00418 * 1 2 3 27 27 H 0.97003 * 120.00267 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.99443 * 353.23087 * 15 13 12 29 29 H 1.07995 * 120.00423 * 169.09199 * 16 15 13 30 30 H 1.08003 * 119.71150 * 0.02646 * 18 17 16 31 31 H 1.07997 * 119.44752 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.87946 * 180.27275 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 8 2.0062 -0.6737 1.1668 13 6 2.2105 0.0786 2.2679 14 8 1.9894 1.2742 2.2371 15 6 2.6967 -0.5436 3.4987 16 6 3.0311 0.2243 4.5563 17 6 3.1384 1.6840 4.4012 18 6 2.6031 2.5432 5.3662 19 7 2.6985 3.8485 5.2274 20 6 3.2946 4.3979 4.1862 21 6 3.8511 3.6173 3.1855 22 9 4.4584 4.1958 2.1263 23 6 3.7829 2.2373 3.2856 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7083 1.1609 -3.4844 28 1 2.7881 -1.6179 3.5610 29 1 3.2200 -0.2320 5.5167 30 1 2.1070 2.1320 6.2329 31 1 3.3504 5.4740 4.1130 32 1 4.2118 1.6043 2.5229 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759344081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:25 Heat of formation + Delta-G solvation = -91.706956 kcal Electronic energy + Delta-G solvation = -19571.688688 eV Core-core repulsion = 16219.026375 eV Total energy + Delta-G solvation = -3352.662313 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03514 -41.67872 -40.70412 -37.96896 -35.40124 -35.31067 -32.72812 -31.86475 -31.01658 -27.51073 -26.38178 -24.77996 -24.06642 -22.46383 -20.64234 -19.19606 -18.69796 -18.27902 -18.21011 -17.83549 -17.03360 -16.88229 -16.60970 -16.23245 -15.32516 -15.01936 -14.78041 -14.42989 -14.32434 -14.23432 -13.89950 -13.68881 -13.22563 -13.15835 -13.01125 -12.84965 -12.42910 -12.21725 -11.84924 -11.56875 -11.17655 -10.99472 -10.69977 -10.60426 -10.19989 -9.58643 -8.31192 -6.48791 -0.64383 -0.00021 0.57338 1.39368 1.43290 1.51537 2.01084 2.12284 2.44128 2.61967 2.99526 3.01440 3.39448 3.56775 3.67871 3.80280 3.98900 4.14765 4.47549 4.56316 4.60706 4.73500 4.78276 4.80055 4.85489 5.00093 5.09249 5.37811 5.46143 5.57090 5.60557 5.90547 6.08258 6.57201 6.74250 6.97766 7.24596 8.76246 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.005321 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.319067 B = 5261.236232 C = 5812.928524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.002 0.998 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.268 1.268 12 O -0.354 6.354 13 C 0.461 3.539 14 O -0.543 6.543 15 C -0.184 4.184 16 C 0.007 3.993 17 C -0.105 4.105 18 C 0.113 3.887 19 N -0.479 5.479 20 C 0.082 3.918 21 C 0.014 3.986 22 F -0.145 7.145 23 C -0.052 4.052 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.270 0.730 28 H 0.182 0.818 29 H 0.215 0.785 30 H 0.206 0.794 31 H 0.186 0.814 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -0.826 16.500 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.193 1.193 12 O -0.271 6.271 13 C 0.309 3.691 14 O -0.437 6.437 15 C -0.203 4.203 16 C -0.011 4.011 17 C -0.107 4.107 18 C -0.044 4.044 19 N -0.187 5.187 20 C -0.076 4.076 21 C -0.008 4.008 22 F -0.124 7.124 23 C -0.079 4.079 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.199 0.801 29 H 0.231 0.769 30 H 0.223 0.777 31 H 0.203 0.797 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.667 0.200 16.898 17.532 hybrid contribution 0.474 -0.274 -2.401 2.462 sum 5.141 -0.074 14.497 15.382 Atomic orbital electron populations 1.21991 0.97149 1.00250 1.00550 1.19841 0.91851 0.92041 0.79870 0.98070 1.21299 1.33456 1.13923 0.90038 0.91373 1.25860 0.94670 0.95625 1.02287 1.70020 1.36596 1.23754 1.25243 0.85240 0.78785 0.78723 0.76724 1.18602 1.20289 1.19319 1.86171 1.76062 1.43547 1.21274 1.22605 0.75118 0.85392 0.85960 1.90860 1.50410 1.17466 1.84955 1.22729 1.05648 1.03169 0.88706 1.22894 0.89784 0.88919 0.99518 1.20167 0.99476 0.96599 0.94505 1.23611 0.94861 0.87608 0.98333 1.67712 1.14839 1.14380 1.21726 1.23178 0.93985 1.01803 0.88655 1.18896 1.01508 0.92428 0.87958 1.91482 1.81229 1.84662 1.55047 1.21750 0.96256 0.93454 0.96423 0.90446 0.93551 0.96037 0.92048 0.80065 0.76860 0.77695 0.79707 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.45 9.31 71.98 0.67 -6.78 16 2 C 0.22 12.13 2.51 29.85 0.07 12.20 16 3 H 0.00 0.10 7.11 -2.39 -0.02 0.08 16 4 C -0.55 -31.57 8.89 25.60 0.23 -31.34 16 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 8 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 O -0.35 -16.92 9.75 -58.17 -0.57 -17.49 16 13 C 0.46 18.42 6.92 69.90 0.48 18.90 16 14 O -0.54 -24.71 11.37 19.42 0.22 -24.49 16 15 C -0.18 -4.51 10.06 23.58 0.24 -4.28 16 16 C 0.01 0.12 9.84 23.86 0.23 0.36 16 17 C -0.11 -2.63 4.55 -20.06 -0.09 -2.72 16 18 C 0.11 2.46 10.96 85.12 0.93 3.40 16 19 N -0.48 -12.51 10.34 -194.34 -2.01 -14.52 16 20 C 0.08 2.25 11.16 84.76 0.95 3.19 16 21 C 0.01 0.44 7.33 22.42 0.16 0.61 16 22 F -0.15 -5.18 17.28 44.97 0.78 -4.40 16 23 C -0.05 -1.70 6.71 22.82 0.15 -1.55 16 24 H 0.08 4.39 6.07 -2.38 -0.01 4.38 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 30 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.12 4.23 7.10 -2.91 -0.02 4.21 16 Total: -1.00 -73.83 289.37 6.31 -67.52 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.14 Total: 8.40 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.48 Total: -6.72 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.77 Total: -68.15 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.35 Total: -41.97 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.83 6.31 -67.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759344081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.189 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds