Wall clock time and date at job start Mon Mar 30 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 N 1.29692 * 119.99940 * 274.99624 * 3 2 1 5 5 O 1.21803 * 120.00393 * 359.97438 * 4 3 2 6 6 C 1.34698 * 117.00329 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.38683 * 119.99725 * 179.97438 * 6 5 4 9 9 N 1.31549 * 120.00173 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99727 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46805 * 60.00322 * 10 8 6 12 12 H 1.48501 * 109.46991 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47474 * 300.00219 * 10 8 6 14 14 C 1.47286 * 119.99950 * 94.99569 * 3 2 1 15 15 C 1.39872 * 120.07498 * 359.72530 * 14 3 2 16 16 C 1.37625 * 119.92230 * 179.71426 * 15 14 3 17 17 C 1.39244 * 120.07501 * 0.58514 * 16 15 14 18 18 S 1.76209 * 119.92529 * 179.69451 * 17 16 15 19 19 C 1.81398 * 102.99817 * 359.97388 * 18 17 16 20 20 C 1.39246 * 120.15205 * 359.66815 * 17 16 15 21 21 C 1.37620 * 120.07415 * 0.04950 * 20 17 16 22 22 H 1.09001 * 109.46631 * 60.00107 * 1 2 3 23 23 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47454 * 300.00341 * 1 2 3 25 25 H 1.08999 * 109.47454 * 239.99659 * 2 1 3 26 26 H 1.09007 * 109.46658 * 119.99432 * 2 1 3 27 27 H 0.97002 * 119.99937 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.04044 * 359.97438 * 15 14 3 29 29 H 1.08005 * 119.96289 * 180.25467 * 16 15 14 30 30 H 1.08998 * 109.46958 * 60.00189 * 19 18 17 31 31 H 1.09003 * 109.46810 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.47366 * 300.00439 * 19 18 17 33 33 H 1.07994 * 119.96274 * 180.02562 * 20 17 16 34 34 H 1.07999 * 120.04183 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1563 2.0648 -1.1189 5 8 1.8671 1.5211 -2.1698 6 6 2.0194 2.2454 -3.2952 7 1 2.3832 3.2608 -3.2389 8 6 1.7090 1.6873 -4.5263 9 7 1.2664 0.4504 -4.5949 10 14 1.9195 2.6920 -6.0870 11 1 3.3410 3.0990 -6.2257 12 1 1.5231 1.8726 -7.2603 13 1 1.0627 3.9027 -6.0157 14 6 2.3826 2.0781 1.2707 15 6 2.2440 1.3870 2.4788 16 6 2.5778 2.0021 3.6638 17 6 3.0413 3.3151 3.6620 18 16 3.4598 4.1017 5.1823 19 6 3.1187 2.8151 6.4147 20 6 3.1754 4.0079 2.4616 21 6 2.8490 3.3968 1.2725 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 1.0497 0.0599 -5.4560 28 1 1.8796 0.3703 2.4814 29 1 2.4749 1.4677 4.5967 30 1 3.7387 1.9424 6.2100 31 1 3.3460 3.1963 7.4103 32 1 2.0670 2.5334 6.3644 33 1 3.5356 5.0260 2.4638 34 1 2.9528 3.9347 0.3418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821227652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:38 Heat of formation + Delta-G solvation = 38.338252 kcal Electronic energy + Delta-G solvation = -17116.622199 eV Core-core repulsion = 14335.812245 eV Total energy + Delta-G solvation = -2780.809953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22762 -38.59188 -34.72929 -32.68283 -31.24553 -30.33162 -29.65048 -28.68423 -25.49218 -23.64380 -22.53486 -21.72048 -19.59807 -18.30909 -17.52128 -16.42739 -15.46128 -14.90099 -14.85197 -14.51672 -14.38964 -14.13584 -13.88134 -13.58617 -13.44817 -12.77552 -12.60605 -12.46327 -11.98395 -11.87089 -11.47214 -11.15616 -11.11237 -10.83561 -10.58836 -10.56175 -10.18852 -10.10775 -9.83652 -9.10342 -8.66828 -8.32651 -7.94552 -6.90883 -6.63107 -4.16378 1.34977 1.62566 1.76391 2.50039 3.02181 3.07300 3.11833 3.32577 3.82277 4.34469 4.81164 4.93274 4.94040 4.94672 5.15800 5.17463 5.50369 5.54109 5.73607 5.80965 5.89483 5.99865 6.12470 6.23338 6.37352 6.41772 6.57363 6.59546 6.70592 6.89443 7.01845 7.09368 7.18625 7.37507 7.83075 8.31319 8.86896 10.16094 10.59608 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.004023 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.392477 B = 6957.572425 C = 7652.054940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.063 4.063 4 N -0.342 5.342 5 O 0.070 5.930 6 C -0.377 4.377 7 H 0.093 0.907 8 C 0.043 3.957 9 N -0.855 5.855 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.268 1.268 14 C 0.036 3.964 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.117 4.117 18 S -0.141 6.141 19 C -0.139 4.139 20 C -0.090 4.090 21 C -0.105 4.105 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.275 0.725 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 2.044 13.937 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.228 4.228 4 N -0.044 5.044 5 O -0.010 6.010 6 C -0.456 4.456 7 H 0.111 0.889 8 C -0.164 4.164 9 N -0.489 5.489 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.193 1.193 14 C 0.033 3.967 15 C -0.140 4.140 16 C -0.145 4.145 17 C -0.229 4.229 18 S 0.098 5.902 19 C -0.308 4.308 20 C -0.113 4.113 21 C -0.126 4.126 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.180 3.677 14.038 14.674 hybrid contribution -0.641 -1.590 -0.909 1.941 sum 1.539 2.087 13.128 13.382 Atomic orbital electron populations 1.21611 0.95937 1.00443 1.01578 1.20462 0.95681 0.94473 1.01670 1.21454 1.16837 0.95181 0.89302 1.70129 1.08717 1.32007 0.93562 1.83299 1.68002 1.40105 1.09578 1.21543 1.46059 0.97736 0.80287 0.88893 1.25370 0.95904 0.96538 0.98633 1.70025 1.39338 1.12714 1.26849 0.85592 0.79291 0.78771 0.78657 1.19306 1.20161 1.19301 1.18300 0.94971 0.92638 0.90835 1.21004 1.01935 0.99989 0.91030 1.20879 1.01827 0.93632 0.98200 1.21494 1.08062 0.97425 0.95965 1.85228 1.84275 1.22683 0.97986 1.23583 1.05298 1.01321 1.00602 1.20577 1.00759 0.99279 0.90658 1.21212 0.99166 0.94667 0.97571 0.92393 0.93528 0.93627 0.91184 0.92480 0.91492 0.85669 0.86530 0.89962 0.87925 0.89958 0.86167 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 37.16 0.37 -2.21 16 2 C -0.08 -1.67 5.35 -27.88 -0.15 -1.82 16 3 C -0.06 -1.39 6.32 -79.82 -0.50 -1.89 16 4 N -0.34 -8.56 9.63 35.06 0.34 -8.23 16 5 O 0.07 1.92 8.78 15.15 0.13 2.05 16 6 C -0.38 -10.26 10.14 30.90 0.31 -9.94 16 7 H 0.09 2.42 7.83 -52.48 -0.41 2.01 16 8 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 9 N -0.85 -23.49 13.67 55.48 0.76 -22.74 16 10 Si 0.95 19.66 29.55 -169.99 -5.02 14.64 16 11 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 13 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 14 C 0.04 0.69 5.87 -104.99 -0.62 0.07 16 15 C -0.12 -1.93 9.35 -39.19 -0.37 -2.30 16 16 C -0.12 -1.78 9.34 -39.43 -0.37 -2.15 16 17 C -0.12 -1.77 6.13 -38.83 -0.24 -2.00 16 18 S -0.14 -1.77 22.56 -107.50 -2.43 -4.20 16 19 C -0.14 -1.22 9.14 101.05 0.92 -0.30 16 20 C -0.09 -1.46 9.77 -39.43 -0.39 -1.84 16 21 C -0.10 -1.94 9.57 -39.19 -0.37 -2.31 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.57 7.58 -51.93 -0.39 1.18 16 26 H 0.06 0.97 6.22 -51.92 -0.32 0.65 16 27 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.13 1.84 6.25 -52.49 -0.33 1.51 16 29 H 0.12 1.37 5.86 -52.48 -0.31 1.07 16 30 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 31 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 2.53 7.55 -52.49 -0.40 2.13 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -28.55 307.59 -7.29 -35.84 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.21 Total: 3.68 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.50 Total: -25.68 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 1.10 Total: -30.96 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.13 Total: 2.05 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.43 Total: -4.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.55 -7.29 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821227652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.178 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds