Wall clock time and date at job start Mon Mar 30 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 N 1.29692 * 119.99940 * 274.99624 * 3 2 1 5 5 O 1.21803 * 120.00393 * 359.97438 * 4 3 2 6 6 C 1.34698 * 117.00329 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.38683 * 119.99725 * 179.97438 * 6 5 4 9 9 N 1.31549 * 120.00173 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99727 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46805 * 60.00322 * 10 8 6 12 12 H 1.48501 * 109.46991 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47474 * 300.00219 * 10 8 6 14 14 C 1.47286 * 119.99950 * 94.99569 * 3 2 1 15 15 C 1.39872 * 120.07498 * 359.72530 * 14 3 2 16 16 C 1.37625 * 119.92230 * 179.71426 * 15 14 3 17 17 C 1.39244 * 120.07501 * 0.58514 * 16 15 14 18 18 S 1.76209 * 119.92529 * 179.69451 * 17 16 15 19 19 C 1.81398 * 102.99817 * 359.97388 * 18 17 16 20 20 C 1.39246 * 120.15205 * 359.66815 * 17 16 15 21 21 C 1.37620 * 120.07415 * 0.04950 * 20 17 16 22 22 H 1.09001 * 109.46631 * 60.00107 * 1 2 3 23 23 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47454 * 300.00341 * 1 2 3 25 25 H 1.08999 * 109.47454 * 239.99659 * 2 1 3 26 26 H 1.09007 * 109.46658 * 119.99432 * 2 1 3 27 27 H 0.97002 * 119.99937 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.04044 * 359.97438 * 15 14 3 29 29 H 1.08005 * 119.96289 * 180.25467 * 16 15 14 30 30 H 1.08998 * 109.46958 * 60.00189 * 19 18 17 31 31 H 1.09003 * 109.46810 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.47366 * 300.00439 * 19 18 17 33 33 H 1.07994 * 119.96274 * 180.02562 * 20 17 16 34 34 H 1.07999 * 120.04183 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1563 2.0648 -1.1189 5 8 1.8671 1.5211 -2.1698 6 6 2.0194 2.2454 -3.2952 7 1 2.3832 3.2608 -3.2389 8 6 1.7090 1.6873 -4.5263 9 7 1.2664 0.4504 -4.5949 10 14 1.9195 2.6920 -6.0870 11 1 3.3410 3.0990 -6.2257 12 1 1.5231 1.8726 -7.2603 13 1 1.0627 3.9027 -6.0157 14 6 2.3826 2.0781 1.2707 15 6 2.2440 1.3870 2.4788 16 6 2.5778 2.0021 3.6638 17 6 3.0413 3.3151 3.6620 18 16 3.4598 4.1017 5.1823 19 6 3.1187 2.8151 6.4147 20 6 3.1754 4.0079 2.4616 21 6 2.8490 3.3968 1.2725 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 1.0497 0.0599 -5.4560 28 1 1.8796 0.3703 2.4814 29 1 2.4749 1.4677 4.5967 30 1 3.7387 1.9424 6.2100 31 1 3.3460 3.1963 7.4103 32 1 2.0670 2.5334 6.3644 33 1 3.5356 5.0260 2.4638 34 1 2.9528 3.9347 0.3418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821227652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:38 Heat of formation + Delta-G solvation = 22.981664 kcal Electronic energy + Delta-G solvation = -17117.288110 eV Core-core repulsion = 14335.812245 eV Total energy + Delta-G solvation = -2781.475865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95992 -39.97037 -36.39858 -34.53227 -32.61965 -31.73447 -31.18071 -29.56815 -27.31143 -25.29521 -23.97789 -23.09796 -21.21502 -20.18713 -18.75939 -17.95791 -17.06459 -16.71802 -16.41930 -16.03674 -15.63831 -15.45619 -15.09357 -14.73435 -14.66201 -14.21528 -13.85925 -13.71755 -13.49132 -13.25884 -12.97998 -12.78371 -12.74569 -12.28450 -12.13587 -12.11448 -11.79691 -11.36492 -11.14057 -10.81264 -10.10405 -9.96362 -9.54279 -8.53598 -8.19427 -6.19000 -0.05872 0.45822 0.63667 1.35933 1.40676 1.52591 1.54829 1.71580 2.13189 2.85838 3.02343 3.11643 3.77823 3.98471 4.04115 4.17967 4.33825 4.35054 4.39547 4.50539 4.53357 4.58701 4.78859 4.85982 4.91942 4.98786 5.09947 5.11667 5.16974 5.28095 5.33524 5.54909 5.70342 5.91882 5.95190 6.52187 6.94441 8.30350 8.73717 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.004023 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.392477 B = 6957.572425 C = 7652.054940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.014 4.014 4 N -0.374 5.374 5 O -0.001 6.001 6 C -0.410 4.410 7 H 0.087 0.913 8 C -0.009 4.009 9 N -0.909 5.909 10 Si 1.026 2.974 11 H -0.260 1.260 12 H -0.266 1.266 13 H -0.260 1.260 14 C -0.013 4.013 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.102 4.102 18 S -0.148 6.148 19 C -0.136 4.136 20 C -0.102 4.102 21 C -0.108 4.108 22 H 0.016 0.984 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.278 0.722 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 2.074 18.190 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 C -0.186 4.186 4 N -0.088 5.088 5 O -0.063 6.063 6 C -0.487 4.487 7 H 0.104 0.896 8 C -0.209 4.209 9 N -0.546 5.546 10 Si 0.844 3.156 11 H -0.184 1.184 12 H -0.190 1.190 13 H -0.184 1.184 14 C -0.017 4.017 15 C -0.119 4.119 16 C -0.144 4.144 17 C -0.215 4.215 18 S 0.093 5.907 19 C -0.304 4.304 20 C -0.125 4.125 21 C -0.130 4.130 22 H 0.035 0.965 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.174 0.826 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.152 0.848 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.452 3.704 18.183 18.718 hybrid contribution -0.624 -1.528 -1.419 2.176 sum 1.828 2.176 16.764 17.003 Atomic orbital electron populations 1.21519 0.94555 1.01980 1.00590 1.20588 0.96817 0.93336 1.01994 1.22442 1.10738 0.95707 0.89749 1.70086 1.11461 1.33327 0.93973 1.83333 1.72464 1.40540 1.09940 1.21820 1.47516 0.97961 0.81444 0.89553 1.26532 0.95160 0.97722 1.01515 1.70140 1.42040 1.14698 1.27707 0.84557 0.79596 0.77258 0.74139 1.18432 1.18984 1.18434 1.18417 0.98932 0.93623 0.90680 1.21275 0.99785 1.00655 0.90187 1.21302 1.00625 0.93425 0.99093 1.21919 1.04836 0.97645 0.97116 1.85430 1.83498 1.24386 0.97423 1.23788 1.06367 1.00268 0.99978 1.20726 1.01155 1.00158 0.90433 1.21181 0.99201 0.94684 0.97914 0.96460 0.90786 0.91383 0.94418 0.88371 0.91277 0.83358 0.82565 0.88749 0.85517 0.88730 0.84785 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.89 71.98 0.71 -4.03 16 2 C -0.09 -3.52 5.35 29.85 0.16 -3.36 16 3 C -0.01 -0.65 6.32 45.26 0.29 -0.36 16 4 N -0.37 -20.06 9.63 -42.99 -0.41 -20.48 16 5 O 0.00 -0.03 8.78 64.11 0.56 0.53 16 6 C -0.41 -24.27 10.14 67.93 0.69 -23.58 16 7 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 8 C -0.01 -0.49 5.49 84.84 0.47 -0.03 16 9 N -0.91 -53.65 13.67 21.62 0.30 -53.35 16 10 Si 1.03 42.46 29.55 68.60 2.03 44.49 16 11 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 12 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 14 C -0.01 -0.49 5.87 -20.11 -0.12 -0.61 16 15 C -0.10 -2.80 9.35 22.52 0.21 -2.59 16 16 C -0.12 -2.92 9.34 22.37 0.21 -2.71 16 17 C -0.10 -2.69 6.13 22.75 0.14 -2.55 16 18 S -0.15 -3.06 22.56 -56.49 -1.27 -4.34 16 19 C -0.14 -1.57 9.14 113.37 1.04 -0.53 16 20 C -0.10 -3.11 9.77 22.37 0.22 -2.89 16 21 C -0.11 -3.99 9.57 22.52 0.22 -3.77 16 22 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 23 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 26 H 0.10 3.07 6.22 -2.38 -0.01 3.06 16 27 H 0.28 14.97 8.31 -92.71 -0.77 14.19 16 28 H 0.15 3.55 6.25 -2.91 -0.02 3.53 16 29 H 0.16 2.58 5.86 -2.91 -0.02 2.56 16 30 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 33 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.11 4.48 7.55 -2.91 -0.02 4.46 16 Total: -1.00 -69.35 307.59 6.52 -62.82 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.10 Total: 17.34 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 4.22 Total: -47.02 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -0.12 Total: -73.83 kcal Atomic # 8 Polarization: -0.03 SS G_CDS: 0.56 Total: 0.53 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -1.27 Total: -4.34 kcal Total: -69.35 6.52 -62.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821227652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.806 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds