Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50691 * 120.00563 * 2 1 4 4 C 1.52998 * 109.47578 * 125.00018 * 3 2 1 5 5 H 1.09008 * 109.46616 * 55.00318 * 4 3 2 6 6 C 1.52998 * 109.47568 * 175.00197 * 4 3 2 7 7 N 1.46495 * 109.47097 * 295.00868 * 4 3 2 8 8 C 1.34783 * 120.00408 * 154.99812 * 7 4 3 9 9 O 1.21758 * 119.99402 * 359.97438 * 8 7 4 10 10 C 1.46234 * 119.99926 * 179.97438 * 8 7 4 11 11 S 1.75665 * 125.23228 * 0.02562 * 10 8 7 12 12 C 1.75469 * 92.09228 * 179.97438 * 11 10 8 13 13 C 1.32767 * 111.36184 * 359.71340 * 12 11 10 14 14 C 1.39550 * 125.22226 * 179.97438 * 10 8 7 15 15 C 1.40535 * 123.72025 * 0.02562 * 14 10 8 16 16 H 1.08006 * 119.99677 * 24.67120 * 15 14 10 17 17 C 1.40299 * 120.00136 * 204.67153 * 15 14 10 18 18 N 1.30642 * 119.99964 * 195.69778 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 15.70588 * 17 15 14 20 20 H 1.48506 * 109.46934 * 263.29237 * 19 17 15 21 21 H 1.48500 * 109.46953 * 23.28623 * 19 17 15 22 22 H 1.48495 * 109.47552 * 143.28732 * 19 17 15 23 23 H 1.08001 * 119.99843 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00439 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99522 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46977 * 5.00078 * 3 2 1 27 27 H 1.09004 * 109.47562 * 245.00832 * 3 2 1 28 28 H 1.08995 * 109.46791 * 60.00372 * 6 4 3 29 29 H 1.09000 * 109.47157 * 179.97438 * 6 4 3 30 30 H 1.09001 * 109.46990 * 300.00275 * 6 4 3 31 31 H 0.97002 * 119.99737 * 334.98753 * 7 4 3 32 32 H 1.07999 * 124.31831 * 180.02562 * 12 11 10 33 33 H 1.08008 * 122.78265 * 180.27451 * 13 12 11 34 34 H 0.97002 * 120.00145 * 353.15693 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4571 1.1402 6 6 3.8877 2.6014 1.1110 7 7 2.2787 1.3221 2.4361 8 6 2.8475 0.8472 3.5620 9 8 3.9899 0.4268 3.5362 10 6 2.0925 0.8369 4.8143 11 16 0.4422 1.4071 5.0075 12 6 0.4369 1.0101 6.7167 13 6 1.5956 0.4832 7.0943 14 6 2.5721 0.3716 6.0394 15 6 3.8627 -0.1531 6.2235 16 1 4.6618 0.1315 5.5550 17 6 4.1132 -1.0467 7.2758 18 7 5.3421 -1.2966 7.6420 19 14 2.6896 -1.8792 8.1531 20 1 2.3616 -1.1256 9.3900 21 1 1.5039 -1.9039 7.2595 22 1 3.0716 -3.2698 8.5073 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9352 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 1.3586 2.1315 0.0896 27 1 2.6212 1.4025 -0.9314 28 1 3.2401 3.4771 1.1524 29 1 4.5795 2.6215 1.9530 30 1 4.4505 2.6094 0.1775 31 1 1.3685 1.6568 2.4565 32 1 -0.4035 1.1691 7.3761 33 1 1.7915 0.1674 8.1085 34 1 6.0834 -0.9438 7.1253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865926134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = -11.854355 kcal Electronic energy + Delta-G solvation = -17670.362196 eV Core-core repulsion = 14887.375728 eV Total energy + Delta-G solvation = -2782.986468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.71068 -36.68416 -35.62740 -33.34683 -33.04537 -30.56969 -28.93253 -26.48897 -26.15710 -22.20465 -21.33527 -20.00429 -19.82970 -19.13654 -17.76693 -16.48375 -15.68762 -14.90498 -14.82926 -14.32908 -13.94706 -13.56248 -13.42651 -13.19645 -12.91819 -12.46881 -12.30828 -11.90117 -11.82006 -11.66779 -11.50044 -11.20453 -10.83604 -10.75678 -10.62301 -10.07732 -9.96629 -9.58888 -9.30015 -9.23382 -8.45704 -8.25282 -7.79392 -7.54105 -7.24867 -4.60158 1.91110 2.39911 2.83313 2.97767 3.20034 3.35097 3.48175 3.56105 3.84381 4.11314 4.41532 4.86833 5.09715 5.16512 5.30555 5.53405 5.65238 5.72016 5.74826 5.86698 5.91803 6.04673 6.09736 6.30742 6.51676 6.68629 6.73586 6.85096 6.87642 7.12338 7.34084 7.37709 7.49018 8.12500 8.38380 8.53466 8.73390 9.57532 9.77480 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.006551 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.193386 B = 4273.216418 C = 4815.281609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.101 4.101 4 C 0.151 3.849 5 H 0.083 0.917 6 C -0.161 4.161 7 N -0.743 5.743 8 C 0.601 3.399 9 O -0.562 6.562 10 C -0.430 4.430 11 S -0.022 6.022 12 C -0.177 4.177 13 C -0.162 4.162 14 C 0.112 3.888 15 C -0.427 4.427 16 H 0.109 0.891 17 C 0.034 3.966 18 N -0.785 5.785 19 Si 1.066 2.934 20 H -0.273 1.273 21 H -0.256 1.256 22 H -0.282 1.282 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.388 0.612 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 3.457 -8.003 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.138 4.138 4 C 0.046 3.954 5 H 0.101 0.899 6 C -0.220 4.220 7 N -0.395 5.395 8 C 0.398 3.602 9 O -0.445 6.445 10 C -0.549 4.549 11 S 0.235 5.765 12 C -0.312 4.312 13 C -0.196 4.196 14 C 0.101 3.899 15 C -0.458 4.458 16 H 0.127 0.873 17 C -0.189 4.189 18 N -0.407 5.407 19 Si 0.892 3.108 20 H -0.200 1.200 21 H -0.180 1.180 22 H -0.209 1.209 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.163 0.837 33 H 0.142 0.858 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.517 2.788 -7.757 11.853 hybrid contribution 0.997 0.673 -0.189 1.217 sum -7.521 3.460 -7.947 11.475 Atomic orbital electron populations 1.23756 0.95871 1.01578 1.02299 1.22896 0.96048 0.98397 0.98752 1.21087 0.98531 0.95746 0.98470 1.20642 0.92705 0.98735 0.83330 0.89888 1.22188 1.00168 0.97712 1.01905 1.45858 1.17133 1.68207 1.08341 1.16769 0.85445 0.76371 0.81658 1.90668 1.18486 1.50020 1.85362 1.22519 0.97125 1.38681 0.96574 1.82785 1.16264 1.71677 1.05746 1.24928 1.00961 1.06785 0.98512 1.21422 0.94630 1.03925 0.99607 1.17934 0.92171 0.91442 0.88357 1.20999 0.95722 1.18493 1.10548 0.87318 1.27634 1.01832 0.94732 0.94732 1.70401 1.00545 1.36591 1.33158 0.83783 0.74450 0.76228 0.76377 1.20006 1.18045 1.20930 0.88823 0.88711 0.87482 0.91317 0.89989 0.92981 0.91835 0.92479 0.77935 0.83744 0.85777 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 14.32 29.02 0.42 -1.95 16 2 C -0.14 -1.84 9.24 -36.03 -0.33 -2.18 16 3 C -0.10 -1.24 5.20 -27.89 -0.15 -1.38 16 4 C 0.15 2.43 2.56 -67.94 -0.17 2.25 16 5 H 0.08 1.51 7.58 -51.92 -0.39 1.12 16 6 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 7 N -0.74 -14.18 4.79 -55.25 -0.26 -14.44 16 8 C 0.60 14.63 7.73 -13.05 -0.10 14.53 16 9 O -0.56 -15.56 14.13 5.14 0.07 -15.49 16 10 C -0.43 -10.65 6.51 -35.88 -0.23 -10.88 16 11 S -0.02 -0.44 22.25 -107.50 -2.39 -2.83 16 12 C -0.18 -3.54 11.07 28.86 0.32 -3.22 16 13 C -0.16 -3.67 7.37 -39.12 -0.29 -3.96 16 14 C 0.11 2.90 5.30 -106.21 -0.56 2.34 16 15 C -0.43 -11.83 8.88 -37.94 -0.34 -12.17 16 16 H 0.11 3.32 6.28 -52.48 -0.33 2.99 16 17 C 0.03 0.89 5.49 -17.28 -0.09 0.79 16 18 N -0.79 -20.67 13.64 55.57 0.76 -19.92 16 19 Si 1.07 22.90 24.85 -169.99 -4.22 18.68 16 20 H -0.27 -5.38 6.81 56.52 0.38 -4.99 16 21 H -0.26 -5.47 6.41 56.52 0.36 -5.11 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H 0.09 1.02 7.84 -52.49 -0.41 0.60 16 24 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 25 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 26 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 6.81 7.68 -40.82 -0.31 6.50 16 32 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 33 H 0.12 2.63 4.44 -52.48 -0.23 2.39 16 34 H 0.29 7.67 8.73 -40.82 -0.36 7.32 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -29.46 300.21 -6.96 -36.42 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.25 Total: 10.91 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.18 Total: -17.86 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.49 Total: -34.36 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.07 Total: -15.49 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.22 Total: 18.68 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.39 Total: -2.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.46 -6.96 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865926134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.570 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds