Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50691 * 120.00563 * 2 1 4 4 C 1.52998 * 109.47578 * 125.00018 * 3 2 1 5 5 H 1.09008 * 109.46616 * 55.00318 * 4 3 2 6 6 C 1.52998 * 109.47568 * 175.00197 * 4 3 2 7 7 N 1.46495 * 109.47097 * 295.00868 * 4 3 2 8 8 C 1.34783 * 120.00408 * 154.99812 * 7 4 3 9 9 O 1.21758 * 119.99402 * 359.97438 * 8 7 4 10 10 C 1.46234 * 119.99926 * 179.97438 * 8 7 4 11 11 S 1.75665 * 125.23228 * 0.02562 * 10 8 7 12 12 C 1.75469 * 92.09228 * 179.97438 * 11 10 8 13 13 C 1.32767 * 111.36184 * 359.71340 * 12 11 10 14 14 C 1.39550 * 125.22226 * 179.97438 * 10 8 7 15 15 C 1.40535 * 123.72025 * 0.02562 * 14 10 8 16 16 H 1.08006 * 119.99677 * 24.67120 * 15 14 10 17 17 C 1.40299 * 120.00136 * 204.67153 * 15 14 10 18 18 N 1.30642 * 119.99964 * 195.69778 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 15.70588 * 17 15 14 20 20 H 1.48506 * 109.46934 * 263.29237 * 19 17 15 21 21 H 1.48500 * 109.46953 * 23.28623 * 19 17 15 22 22 H 1.48495 * 109.47552 * 143.28732 * 19 17 15 23 23 H 1.08001 * 119.99843 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00439 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99522 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46977 * 5.00078 * 3 2 1 27 27 H 1.09004 * 109.47562 * 245.00832 * 3 2 1 28 28 H 1.08995 * 109.46791 * 60.00372 * 6 4 3 29 29 H 1.09000 * 109.47157 * 179.97438 * 6 4 3 30 30 H 1.09001 * 109.46990 * 300.00275 * 6 4 3 31 31 H 0.97002 * 119.99737 * 334.98753 * 7 4 3 32 32 H 1.07999 * 124.31831 * 180.02562 * 12 11 10 33 33 H 1.08008 * 122.78265 * 180.27451 * 13 12 11 34 34 H 0.97002 * 120.00145 * 353.15693 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4571 1.1402 6 6 3.8877 2.6014 1.1110 7 7 2.2787 1.3221 2.4361 8 6 2.8475 0.8472 3.5620 9 8 3.9899 0.4268 3.5362 10 6 2.0925 0.8369 4.8143 11 16 0.4422 1.4071 5.0075 12 6 0.4369 1.0101 6.7167 13 6 1.5956 0.4832 7.0943 14 6 2.5721 0.3716 6.0394 15 6 3.8627 -0.1531 6.2235 16 1 4.6618 0.1315 5.5550 17 6 4.1132 -1.0467 7.2758 18 7 5.3421 -1.2966 7.6420 19 14 2.6896 -1.8792 8.1531 20 1 2.3616 -1.1256 9.3900 21 1 1.5039 -1.9039 7.2595 22 1 3.0716 -3.2698 8.5073 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9352 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 1.3586 2.1315 0.0896 27 1 2.6212 1.4025 -0.9314 28 1 3.2401 3.4771 1.1524 29 1 4.5795 2.6215 1.9530 30 1 4.4505 2.6094 0.1775 31 1 1.3685 1.6568 2.4565 32 1 -0.4035 1.1691 7.3761 33 1 1.7915 0.1674 8.1085 34 1 6.0834 -0.9438 7.1253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865926134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = -31.493196 kcal Electronic energy + Delta-G solvation = -17671.213800 eV Core-core repulsion = 14887.375728 eV Total energy + Delta-G solvation = -2783.838072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46328 -38.34628 -37.21607 -35.23319 -34.38352 -32.09422 -30.69715 -28.06323 -27.53833 -23.93084 -22.92153 -21.59754 -21.11779 -20.78116 -19.48231 -18.27724 -17.10809 -16.62459 -16.34739 -15.83304 -15.48416 -15.16817 -15.04430 -14.78210 -14.24681 -14.14300 -13.70555 -13.55827 -13.33512 -13.22742 -12.86068 -12.65755 -12.55663 -11.93102 -11.86642 -11.77976 -11.73262 -11.34899 -11.08736 -10.45670 -10.22144 -9.94116 -9.70976 -9.35907 -9.05663 -6.59287 0.12323 1.18092 1.26957 1.42126 1.48740 1.58883 1.69356 1.79323 2.12455 2.50260 2.54663 3.16897 3.78635 4.00301 4.21815 4.26201 4.35640 4.43730 4.49427 4.68104 4.73830 4.80476 4.92292 5.05622 5.11970 5.17438 5.26596 5.28184 5.37826 5.56186 5.73476 5.79682 5.90481 6.17491 6.31018 6.65724 6.93858 7.71132 7.77576 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.006551 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.193386 B = 4273.216418 C = 4815.281609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C -0.087 4.087 4 C 0.144 3.856 5 H 0.052 0.948 6 C -0.155 4.155 7 N -0.724 5.724 8 C 0.589 3.411 9 O -0.608 6.608 10 C -0.462 4.462 11 S 0.052 5.948 12 C -0.153 4.153 13 C -0.197 4.197 14 C 0.098 3.902 15 C -0.475 4.475 16 H 0.056 0.944 17 C 0.003 3.997 18 N -0.812 5.812 19 Si 1.103 2.897 20 H -0.236 1.236 21 H -0.252 1.252 22 H -0.278 1.278 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.087 0.913 31 H 0.399 0.601 32 H 0.198 0.802 33 H 0.140 0.860 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 4.716 -8.430 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.186 4.186 3 C -0.124 4.124 4 C 0.040 3.960 5 H 0.070 0.930 6 C -0.213 4.213 7 N -0.376 5.376 8 C 0.385 3.615 9 O -0.494 6.494 10 C -0.580 4.580 11 S 0.310 5.690 12 C -0.288 4.288 13 C -0.230 4.230 14 C 0.087 3.913 15 C -0.506 4.506 16 H 0.075 0.925 17 C -0.214 4.214 18 N -0.434 5.434 19 Si 0.920 3.080 20 H -0.160 1.160 21 H -0.176 1.176 22 H -0.204 1.204 23 H 0.129 0.871 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.215 0.785 33 H 0.157 0.843 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.841 4.095 -8.233 15.794 hybrid contribution 2.184 0.423 -0.333 2.249 sum -10.657 4.518 -8.565 14.400 Atomic orbital electron populations 1.23975 0.95473 1.02739 1.00207 1.22935 0.96674 0.98274 1.00702 1.21011 0.98017 0.96080 0.97278 1.20888 0.93466 0.98201 0.83468 0.92958 1.22124 0.99749 0.97634 1.01798 1.45698 1.17506 1.66349 1.08042 1.17105 0.85017 0.76222 0.83161 1.90655 1.20605 1.51845 1.86291 1.23166 1.00542 1.37687 0.96633 1.82409 1.11169 1.69653 1.05769 1.25596 1.01267 1.03012 0.98948 1.21389 0.94964 1.07066 0.99597 1.18334 0.92383 0.90509 0.90083 1.20768 0.95972 1.22089 1.11819 0.92538 1.28959 1.03482 0.94092 0.94828 1.70491 1.00735 1.38328 1.33885 0.83413 0.71694 0.75944 0.76917 1.16048 1.17603 1.20424 0.87066 0.88172 0.88917 0.89320 0.87459 0.91062 0.95899 0.89383 0.76635 0.78478 0.84294 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 14.32 67.79 0.97 -2.94 16 2 C -0.17 -4.03 9.24 25.65 0.24 -3.79 16 3 C -0.09 -1.90 5.20 29.84 0.16 -1.74 16 4 C 0.14 4.57 2.56 44.99 0.12 4.69 16 5 H 0.05 1.99 7.58 -2.38 -0.02 1.97 16 6 C -0.15 -4.47 9.48 71.98 0.68 -3.78 16 7 N -0.72 -27.33 4.79 -446.90 -2.14 -29.47 16 8 C 0.59 29.60 7.73 86.32 0.67 30.26 16 9 O -0.61 -36.18 14.13 -4.53 -0.06 -36.24 16 10 C -0.46 -22.85 6.51 24.67 0.16 -22.69 16 11 S 0.05 1.91 22.25 -56.49 -1.26 0.65 16 12 C -0.15 -5.39 11.07 66.64 0.74 -4.65 16 13 C -0.20 -8.46 7.37 22.60 0.17 -8.30 16 14 C 0.10 5.19 5.30 -20.89 -0.11 5.08 16 15 C -0.47 -28.14 8.88 23.33 0.21 -27.93 16 16 H 0.06 3.84 6.28 -2.91 -0.02 3.82 16 17 C 0.00 0.17 5.49 85.37 0.47 0.64 16 18 N -0.81 -45.58 13.64 21.89 0.30 -45.29 16 19 Si 1.10 45.79 24.85 68.60 1.70 47.49 16 20 H -0.24 -8.36 6.81 99.48 0.68 -7.68 16 21 H -0.25 -10.18 6.41 99.48 0.64 -9.54 16 22 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 23 H 0.11 1.93 7.84 -2.91 -0.02 1.91 16 24 H 0.10 1.97 8.06 -2.91 -0.02 1.94 16 25 H 0.09 2.46 8.06 -2.91 -0.02 2.44 16 26 H 0.09 1.63 7.79 -2.39 -0.02 1.62 16 27 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.40 13.10 7.68 -92.71 -0.71 12.39 16 32 H 0.20 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.14 5.48 4.44 -2.91 -0.01 5.47 16 34 H 0.28 16.02 8.73 -92.71 -0.81 15.21 16 Total: -1.00 -71.00 300.21 3.26 -67.73 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.26 Total: 30.28 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.46 Total: -35.16 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.84 Total: -74.75 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.06 Total: -36.24 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.70 Total: 47.49 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.26 Total: 0.65 kcal Total: -71.00 3.26 -67.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865926134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.242 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds