Wall clock time and date at job start Mon Mar 30 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46991 * 2 1 4 4 C 1.46499 * 119.99711 * 269.99894 * 3 2 1 5 5 C 1.50696 * 109.47391 * 270.00043 * 4 3 2 6 6 H 1.08006 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00396 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99632 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47040 * 60.00001 * 9 7 5 11 11 H 1.48505 * 109.46937 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47412 * 299.99610 * 9 7 5 13 13 C 1.38995 * 120.00160 * 89.99871 * 3 2 1 14 14 C 1.39145 * 119.70615 * 5.02392 * 13 3 2 15 15 C 1.38297 * 119.09830 * 179.97438 * 14 13 3 16 16 N 1.48001 * 120.74840 * 180.02562 * 15 14 13 17 17 O 1.21802 * 119.99503 * 36.87612 * 16 15 14 18 18 O 1.21796 * 120.00188 * 216.87295 * 16 15 14 19 19 C 1.38881 * 118.50237 * 359.75330 * 15 14 13 20 20 C 1.50705 * 120.33524 * 180.24441 * 19 15 14 21 21 C 1.38028 * 119.33307 * 0.46714 * 19 15 14 22 22 N 1.31971 * 120.85263 * 359.52352 * 21 19 15 23 23 H 1.09005 * 109.47212 * 300.00267 * 1 2 3 24 24 H 1.09002 * 109.47393 * 60.00173 * 1 2 3 25 25 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47337 * 240.00203 * 2 1 3 27 27 H 1.08998 * 109.46910 * 119.99805 * 2 1 3 28 28 H 1.09001 * 109.47444 * 30.00445 * 4 3 2 29 29 H 1.09000 * 109.46864 * 149.99776 * 4 3 2 30 30 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.44622 * 0.02562 * 14 13 3 32 32 H 1.08998 * 109.47169 * 275.76702 * 20 19 15 33 33 H 1.09002 * 109.46622 * 35.76645 * 20 19 15 34 34 H 1.08995 * 109.47280 * 155.76762 * 20 19 15 35 35 H 1.08005 * 119.57273 * 179.79955 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8776 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0975 -3.4164 10 1 6.1416 0.6410 -3.5942 11 1 6.1612 2.7974 -4.7026 12 1 6.8409 2.6209 -2.3812 13 6 2.2500 2.0366 1.2037 14 6 2.1171 1.3433 2.4029 15 6 2.3511 2.0075 3.5931 16 7 2.2209 1.3056 4.8896 17 8 2.5676 0.1423 4.9897 18 8 1.7672 1.8912 5.8563 19 6 2.7166 3.3465 3.5442 20 6 2.9868 4.1087 4.8159 21 6 2.8253 3.9734 2.3193 22 7 2.5959 3.3145 1.1991 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0954 3.1410 -1.1384 30 1 3.6753 3.5169 -4.4436 31 1 1.8359 0.3006 2.4039 32 1 2.0464 4.4782 5.2248 33 1 3.4637 3.4488 5.5405 34 1 3.6456 4.9503 4.6021 35 1 3.1061 5.0154 2.2769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133523688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:16 Heat of formation + Delta-G solvation = 38.497569 kcal Electronic energy + Delta-G solvation = -20072.672820 eV Core-core repulsion = 16881.409656 eV Total energy + Delta-G solvation = -3191.263165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15387 -40.18685 -36.93995 -36.44117 -33.48874 -33.01811 -31.86852 -30.39182 -28.15236 -26.49481 -25.86211 -23.68660 -22.69243 -22.45544 -20.77373 -18.71478 -18.50872 -17.68662 -16.61175 -16.25370 -16.18825 -15.22003 -14.81101 -14.54558 -14.19530 -13.96995 -13.34673 -13.02939 -12.60509 -12.54936 -12.21789 -12.07458 -11.75724 -11.51405 -11.35428 -11.19245 -11.08873 -10.99836 -10.80904 -10.66787 -10.33048 -10.20485 -9.98711 -9.34644 -9.21520 -8.55628 -7.14554 -6.15864 -4.23387 0.12890 1.26633 1.45414 1.48604 3.22946 3.27892 3.29053 3.40615 3.84820 4.32218 4.49195 4.68373 4.83184 4.89513 5.16518 5.20795 5.27611 5.39276 5.45278 5.53686 5.59147 5.65595 5.81487 5.91513 6.01139 6.06044 6.23388 6.34789 6.52575 6.79924 7.25807 7.53599 7.71708 7.73607 7.92549 8.06762 8.35845 8.80516 9.41925 10.89987 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.005605 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.578138 B = 4994.064962 C = 5538.295532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.571 5.571 4 C 0.250 3.750 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.430 3.570 14 C -0.205 4.205 15 C 0.053 3.947 16 N 0.026 4.974 17 O -0.161 6.161 18 O -0.149 6.149 19 C -0.182 4.182 20 C -0.100 4.100 21 C 0.174 3.826 22 N -0.489 5.489 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.265 0.735 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -1.143 11.215 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.276 5.276 4 C 0.132 3.868 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.191 3.809 14 C -0.234 4.234 15 C -0.036 4.036 16 N 0.549 4.451 17 O -0.377 6.377 18 O -0.368 6.368 19 C -0.189 4.189 20 C -0.157 4.157 21 C 0.011 3.989 22 N -0.205 5.205 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.620 -0.444 9.293 9.983 hybrid contribution 0.923 -0.822 0.675 1.408 sum -2.698 -1.267 9.968 10.404 Atomic orbital electron populations 1.22221 0.96333 1.01817 1.02446 1.21531 0.93735 0.82625 1.03226 1.47406 1.63675 1.12395 1.04154 1.19442 0.96363 0.93896 0.77125 1.21370 0.96721 1.32342 1.06579 0.92589 1.24897 0.97847 0.94782 0.96228 1.69909 1.35741 1.33089 1.14327 0.86568 0.84631 0.78387 0.77903 1.20221 1.21067 1.20221 1.18183 0.89050 0.87860 0.85827 1.21118 1.10488 1.02041 0.89726 1.20819 1.07307 0.92865 0.82584 1.43667 0.97822 1.00815 1.02805 1.94543 1.51302 1.00898 1.90938 1.94500 1.44809 1.68146 1.29351 1.20322 1.08013 0.91581 0.98956 1.20649 1.02682 0.99567 0.92840 1.22563 0.92053 0.99611 0.84673 1.67470 1.15282 1.07372 1.30326 0.93109 0.91793 0.91711 0.89095 0.91421 0.94831 0.92900 0.92517 0.83273 0.90150 0.91970 0.90835 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.77 5.97 -4.04 -0.02 1.74 16 3 N -0.57 -11.27 2.57 -175.21 -0.45 -11.72 16 4 C 0.25 6.01 5.22 -5.20 -0.03 5.98 16 5 C -0.53 -14.08 9.39 -34.44 -0.32 -14.41 16 6 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 9 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.43 8.18 7.37 -155.03 -1.14 7.03 16 14 C -0.21 -3.43 8.92 -39.22 -0.35 -3.78 16 15 C 0.05 0.86 6.52 -79.70 -0.52 0.34 16 16 N 0.03 0.43 4.18 34.09 0.14 0.57 16 17 O -0.16 -2.70 19.00 -29.46 -0.56 -3.26 16 18 O -0.15 -2.34 16.94 -29.46 -0.50 -2.84 16 19 C -0.18 -2.64 5.89 -104.46 -0.62 -3.26 16 20 C -0.10 -1.14 8.73 36.01 0.31 -0.82 16 21 C 0.17 2.67 10.83 -17.57 -0.19 2.48 16 22 N -0.49 -9.48 9.08 -12.44 -0.11 -9.59 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 27 H 0.07 0.94 5.98 -51.93 -0.31 0.63 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.15 2.26 6.02 -52.49 -0.32 1.94 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.75 7.03 -51.93 -0.36 0.39 16 34 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -29.17 307.72 -8.01 -37.18 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.29 Total: -1.64 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.60 Total: -4.92 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.32 Total: -45.09 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -1.06 Total: -6.09 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.17 -8.01 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133523688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.674 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds