Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46991 * 2 1 4 4 C 1.46499 * 119.99711 * 269.99894 * 3 2 1 5 5 C 1.50696 * 109.47391 * 270.00043 * 4 3 2 6 6 H 1.08006 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00396 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99632 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47040 * 60.00001 * 9 7 5 11 11 H 1.48505 * 109.46937 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47412 * 299.99610 * 9 7 5 13 13 C 1.38995 * 120.00160 * 89.99871 * 3 2 1 14 14 C 1.39145 * 119.70615 * 5.02392 * 13 3 2 15 15 C 1.38297 * 119.09830 * 179.97438 * 14 13 3 16 16 N 1.48001 * 120.74840 * 180.02562 * 15 14 13 17 17 O 1.21802 * 119.99503 * 36.87612 * 16 15 14 18 18 O 1.21796 * 120.00188 * 216.87295 * 16 15 14 19 19 C 1.38881 * 118.50237 * 359.75330 * 15 14 13 20 20 C 1.50705 * 120.33524 * 180.24441 * 19 15 14 21 21 C 1.38028 * 119.33307 * 0.46714 * 19 15 14 22 22 N 1.31971 * 120.85263 * 359.52352 * 21 19 15 23 23 H 1.09005 * 109.47212 * 300.00267 * 1 2 3 24 24 H 1.09002 * 109.47393 * 60.00173 * 1 2 3 25 25 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47337 * 240.00203 * 2 1 3 27 27 H 1.08998 * 109.46910 * 119.99805 * 2 1 3 28 28 H 1.09001 * 109.47444 * 30.00445 * 4 3 2 29 29 H 1.09000 * 109.46864 * 149.99776 * 4 3 2 30 30 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.44622 * 0.02562 * 14 13 3 32 32 H 1.08998 * 109.47169 * 275.76702 * 20 19 15 33 33 H 1.09002 * 109.46622 * 35.76645 * 20 19 15 34 34 H 1.08995 * 109.47280 * 155.76762 * 20 19 15 35 35 H 1.08005 * 119.57273 * 179.79955 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8776 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0975 -3.4164 10 1 6.1416 0.6410 -3.5942 11 1 6.1612 2.7974 -4.7026 12 1 6.8409 2.6209 -2.3812 13 6 2.2500 2.0366 1.2037 14 6 2.1171 1.3433 2.4029 15 6 2.3511 2.0075 3.5931 16 7 2.2209 1.3056 4.8896 17 8 2.5676 0.1423 4.9897 18 8 1.7672 1.8912 5.8563 19 6 2.7166 3.3465 3.5442 20 6 2.9868 4.1087 4.8159 21 6 2.8253 3.9734 2.3193 22 7 2.5959 3.3145 1.1991 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0954 3.1410 -1.1384 30 1 3.6753 3.5169 -4.4436 31 1 1.8359 0.3006 2.4039 32 1 2.0464 4.4782 5.2248 33 1 3.4637 3.4488 5.5405 34 1 3.6456 4.9503 4.6021 35 1 3.1061 5.0154 2.2769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133523688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = 23.680776 kcal Electronic energy + Delta-G solvation = -20073.315325 eV Core-core repulsion = 16881.409656 eV Total energy + Delta-G solvation = -3191.905669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.43206 -41.51284 -38.32394 -37.73702 -34.97593 -34.75513 -33.12520 -31.80800 -29.63610 -27.99562 -27.13750 -25.23487 -24.08547 -23.78970 -22.12432 -20.00470 -19.87362 -18.98842 -18.57116 -17.68817 -17.56152 -16.58839 -16.41455 -16.02354 -15.38604 -15.29153 -14.71785 -14.38754 -13.96939 -13.65673 -13.61588 -13.32069 -13.23523 -12.97870 -12.77126 -12.73232 -12.55059 -12.44307 -12.25619 -12.22324 -11.92483 -11.86371 -11.46821 -10.84505 -10.67313 -10.54728 -8.64743 -8.14335 -6.35723 -1.15192 0.00222 0.16900 0.19516 1.37487 1.38512 1.46575 2.00989 2.37723 2.54593 3.08277 3.28468 3.46833 3.55926 3.69500 4.02388 4.08000 4.22067 4.28014 4.34781 4.52233 4.70816 4.74993 4.85898 4.90796 4.98620 5.02402 5.05715 5.19244 5.28607 5.39765 5.65282 5.99260 6.09463 6.32960 6.44229 6.73887 7.03275 7.34005 8.84124 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.005605 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.578138 B = 4994.064962 C = 5538.295532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 N -0.587 5.587 4 C 0.272 3.728 5 C -0.540 4.540 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.923 5.923 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.410 3.590 14 C -0.203 4.203 15 C 0.039 3.961 16 N 0.028 4.972 17 O -0.185 6.185 18 O -0.126 6.126 19 C -0.162 4.162 20 C -0.100 4.100 21 C 0.170 3.830 22 N -0.528 5.528 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.017 0.983 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -0.932 12.868 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.014 4.014 3 N -0.294 5.294 4 C 0.151 3.849 5 C -0.578 4.578 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.563 5.563 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.173 3.827 14 C -0.231 4.231 15 C -0.050 4.050 16 N 0.551 4.449 17 O -0.394 6.394 18 O -0.352 6.352 19 C -0.169 4.169 20 C -0.157 4.157 21 C 0.008 3.992 22 N -0.245 5.245 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.050 -0.301 10.966 11.386 hybrid contribution 0.717 -0.771 0.334 1.104 sum -2.333 -1.072 11.299 11.588 Atomic orbital electron populations 1.22135 0.94572 1.03491 1.01556 1.21717 0.95161 0.80834 1.03638 1.47215 1.65452 1.13633 1.03105 1.18818 0.94749 0.92495 0.78831 1.21619 0.97813 1.31873 1.06535 0.93483 1.25675 1.01639 0.94571 0.96355 1.70015 1.37480 1.34043 1.14750 0.85606 0.79907 0.78609 0.77499 1.19372 1.20407 1.20223 1.18311 0.90175 0.88157 0.86106 1.21073 1.10330 1.02486 0.89171 1.21005 1.07948 0.93604 0.82475 1.43638 0.97767 1.00747 1.02772 1.94558 1.52588 1.01189 1.91091 1.94482 1.43594 1.67928 1.29210 1.20763 1.04964 0.90997 1.00127 1.20796 1.04112 1.00004 0.90825 1.23159 0.91238 1.00871 0.83896 1.67438 1.16233 1.08128 1.32696 0.93160 0.93418 0.88668 0.90045 0.89531 0.96546 0.95870 0.92403 0.82165 0.88565 0.92405 0.87911 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.45 16 2 C 0.11 3.43 5.97 86.38 0.52 3.95 16 3 N -0.59 -23.71 2.57 -708.23 -1.82 -25.54 16 4 C 0.27 13.58 5.22 85.63 0.45 14.03 16 5 C -0.54 -29.27 9.39 25.60 0.24 -29.03 16 6 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 7 C 0.02 0.94 5.46 84.66 0.46 1.41 16 8 N -0.92 -52.94 13.29 21.45 0.28 -52.66 16 9 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.41 15.66 7.37 133.07 0.98 16.64 16 14 C -0.20 -6.62 8.92 22.50 0.20 -6.42 16 15 C 0.04 1.19 6.52 36.55 0.24 1.43 16 16 N 0.03 0.86 4.18 -46.07 -0.19 0.66 16 17 O -0.18 -5.96 19.00 18.88 0.36 -5.60 16 18 O -0.13 -3.62 16.94 18.89 0.32 -3.30 16 19 C -0.16 -4.31 5.89 -19.76 -0.12 -4.42 16 20 C -0.10 -1.90 8.73 71.24 0.62 -1.28 16 21 C 0.17 4.92 10.83 84.62 0.92 5.84 16 22 N -0.53 -20.50 9.08 -193.26 -1.75 -22.26 16 23 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 27 H 0.09 2.35 5.98 -2.39 -0.01 2.34 16 28 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 29 H 0.02 1.28 7.30 -2.39 -0.02 1.27 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.16 4.71 6.02 -2.91 -0.02 4.69 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.19 7.03 -2.39 -0.02 1.18 16 34 H 0.10 1.39 8.06 -2.39 -0.02 1.37 16 35 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -63.54 307.72 5.57 -57.97 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.10 Total: 6.88 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.24 Total: -1.31 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.48 Total: -99.79 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.68 Total: -8.90 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.54 5.57 -57.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133523688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.655 kcal (2) G-P(sol) polarization free energy of solvation -63.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds