Wall clock time and date at job start Mon Mar 30 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48499 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46933 * 299.99972 * 3 2 1 6 6 H 1.48495 * 109.47451 * 59.99761 * 3 2 1 7 7 C 1.37874 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00452 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47369 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.58692 * 48.69943 * 10 9 7 12 12 C 1.53188 * 109.70911 * 169.06013 * 10 9 7 13 13 C 1.53036 * 109.31675 * 174.48948 * 12 10 9 14 14 C 1.53042 * 109.53725 * 298.63470 * 13 12 10 15 15 C 1.53183 * 109.31293 * 61.36601 * 14 13 12 16 16 N 1.46931 * 108.77732 * 305.36227 * 15 14 13 17 17 C 1.34770 * 120.63282 * 233.59032 * 16 15 14 18 18 O 1.21279 * 119.99892 * 173.79458 * 17 16 15 19 19 C 1.50704 * 120.00173 * 353.79233 * 17 16 15 20 20 F 1.39894 * 109.47392 * 180.02562 * 19 17 16 21 21 F 1.39894 * 109.47110 * 300.00347 * 19 17 16 22 22 F 1.39902 * 109.46872 * 60.00285 * 19 17 16 23 23 H 0.97004 * 119.99222 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47105 * 60.00231 * 9 7 2 25 25 H 1.08998 * 109.47139 * 300.00210 * 9 7 2 26 26 H 1.09006 * 109.49637 * 54.53662 * 12 10 9 27 27 H 1.08999 * 109.49822 * 294.44782 * 12 10 9 28 28 H 1.09003 * 109.46211 * 178.61399 * 13 12 10 29 29 H 1.09003 * 109.45875 * 58.65798 * 13 12 10 30 30 H 1.09001 * 109.49345 * 181.31771 * 14 13 12 31 31 H 1.09004 * 109.49486 * 301.37856 * 14 13 12 32 32 H 1.09001 * 109.58967 * 65.14861 * 15 14 13 33 33 H 1.09003 * 109.58937 * 185.43489 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9977 -3.4995 0.7709 12 6 1.5046 -4.9748 0.2732 13 6 2.4810 -6.1451 0.1354 14 6 3.0295 -6.1887 -1.2927 15 6 3.7874 -4.8898 -1.5841 16 7 2.8977 -3.7522 -1.3139 17 6 2.6844 -2.8092 -2.2528 18 8 1.8632 -1.9375 -2.0611 19 6 3.4662 -2.8378 -3.5409 20 9 3.0725 -1.7662 -4.3493 21 9 4.8324 -2.7317 -3.2595 22 9 3.2198 -4.0419 -4.2092 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 0.6932 -5.0915 -0.4454 27 1 1.0965 -4.9585 1.2837 28 1 1.9622 -7.0786 0.3538 29 1 3.3049 -6.0151 0.8371 30 1 3.7069 -7.0364 -1.3964 31 1 2.2038 -6.2945 -1.9964 32 1 4.6658 -4.8273 -0.9417 33 1 4.0971 -4.8740 -2.6291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260045704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:46 Heat of formation + Delta-G solvation = -181.431155 kcal Electronic energy + Delta-G solvation = -22073.790815 eV Core-core repulsion = 18298.841334 eV Total energy + Delta-G solvation = -3774.949481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.35714 -48.85769 -48.78860 -41.40013 -38.35243 -35.34061 -33.89312 -33.11997 -29.55670 -28.45444 -26.08112 -24.80546 -23.23255 -22.01963 -20.95726 -19.78326 -19.63279 -18.75180 -18.41936 -16.87622 -16.51453 -16.44461 -16.10420 -15.78295 -15.49691 -15.36947 -15.17515 -14.93522 -14.83611 -14.74660 -14.58365 -14.14869 -13.90005 -13.59187 -13.52754 -13.36908 -12.75739 -12.58179 -12.24338 -12.02414 -11.71055 -11.49013 -11.31166 -11.05808 -10.53870 -9.94595 -9.50064 -8.10182 -5.99571 1.08312 1.16528 1.34199 1.39272 1.45057 2.05937 2.43356 2.70484 3.08442 3.20571 3.35713 3.84747 4.04008 4.05699 4.20983 4.40736 4.49642 4.64739 4.87508 4.97052 4.98365 5.11937 5.19485 5.28860 5.37277 5.47148 5.54384 5.83813 5.98358 6.24314 6.33919 6.90583 7.04624 7.49204 9.02576 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.010017 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.469541 B = 2794.682005 C = 3846.845256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.041 0.959 9 C 0.025 3.975 10 C 0.159 3.841 11 H 0.070 0.930 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.087 3.913 16 N -0.584 5.584 17 C 0.421 3.579 18 O -0.426 6.426 19 C 0.450 3.550 20 F -0.172 7.172 21 F -0.170 7.170 22 F -0.164 7.164 23 H 0.256 0.744 24 H 0.019 0.981 25 H -0.005 1.005 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -14.196 -3.480 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.060 0.940 9 C -0.012 4.012 10 C 0.057 3.943 11 H 0.088 0.912 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.164 4.164 15 C -0.035 4.035 16 N -0.320 5.320 17 C 0.200 3.800 18 O -0.295 6.295 19 C 0.392 3.608 20 F -0.153 7.153 21 F -0.152 7.152 22 F -0.145 7.145 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.013 0.987 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.551 -13.592 -3.390 16.412 hybrid contribution 0.250 1.438 -0.455 1.529 sum 8.801 -12.154 -3.845 15.490 Atomic orbital electron populations 1.70066 1.07326 1.26645 1.52679 1.25566 0.95447 1.01953 0.96079 0.85796 0.79270 0.81020 0.77417 1.19172 1.21586 1.20109 1.21187 0.91903 0.92105 1.44712 0.94040 1.19543 0.94369 0.91739 0.95529 1.21472 0.94793 0.96218 0.81812 0.91245 1.21976 0.98507 0.93945 1.02032 1.21521 0.98853 0.97630 0.96925 1.21889 1.00673 0.96463 0.97336 1.22282 0.93022 0.85252 1.02923 1.47808 1.47278 1.23435 1.13494 1.20642 0.87977 0.85400 0.85953 1.91301 1.30863 1.35194 1.72106 1.20801 0.78591 0.74076 0.87369 1.93186 1.90802 1.56602 1.74739 1.93204 1.32661 1.95750 1.93537 1.93163 1.93980 1.44860 1.82500 0.93491 0.96291 0.98710 0.93097 0.90410 0.89708 0.90635 0.87349 0.92213 0.89296 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.01 0.40 5.32 84.65 0.45 0.86 16 3 Si 0.94 46.98 29.54 68.60 2.03 49.00 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.46 -26.25 5.75 25.60 0.15 -26.10 16 8 H 0.04 2.34 7.72 -2.91 -0.02 2.32 16 9 C 0.03 1.30 3.98 29.85 0.12 1.42 16 10 C 0.16 6.05 2.83 44.97 0.13 6.18 16 11 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 12 C -0.13 -3.72 5.36 30.67 0.16 -3.56 16 13 C -0.11 -2.25 5.88 30.62 0.18 -2.07 16 14 C -0.13 -2.39 6.08 30.67 0.19 -2.20 16 15 C 0.09 2.09 5.84 86.36 0.50 2.59 16 16 N -0.58 -20.61 2.97 -795.03 -2.36 -22.97 16 17 C 0.42 17.58 6.79 87.66 0.60 18.18 16 18 O -0.43 -22.55 10.18 -3.03 -0.03 -22.58 16 19 C 0.45 15.74 2.79 71.24 0.20 15.94 16 20 F -0.17 -6.65 16.92 44.97 0.76 -5.89 16 21 F -0.17 -5.40 16.35 44.97 0.74 -4.67 16 22 F -0.16 -4.83 15.29 44.97 0.69 -4.14 16 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.02 1.11 6.11 -2.45 -0.01 1.10 16 25 H -0.01 -0.29 8.11 -2.39 -0.02 -0.31 16 26 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.98 4.69 -2.39 -0.01 1.97 16 Total: -1.00 -69.24 276.50 5.90 -63.34 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: 1.13 Total: -5.45 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 2.67 Total: 11.24 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.08 Total: -80.85 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.03 Total: -22.58 kcal Atomic # 9 Polarization: -16.89 SS G_CDS: 2.18 Total: -14.70 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -69.24 5.90 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.091 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds