Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47270 * 90.00077 * 3 2 1 5 5 H 1.48500 * 109.47288 * 210.00736 * 3 2 1 6 6 H 1.48502 * 109.47183 * 330.00230 * 3 2 1 7 7 C 1.37879 * 119.99987 * 179.72951 * 2 1 3 8 8 H 1.08005 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47204 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.58576 * 311.34999 * 10 9 7 12 12 C 1.53196 * 109.58505 * 191.06904 * 10 9 7 13 13 C 1.53050 * 109.31080 * 185.58071 * 12 10 9 14 14 C 1.53036 * 109.53856 * 61.36252 * 13 12 10 15 15 C 1.53190 * 109.31555 * 298.63588 * 14 13 12 16 16 N 1.46921 * 109.58376 * 71.78147 * 10 9 7 17 17 C 1.34772 * 120.63535 * 353.39452 * 16 10 9 18 18 O 1.21290 * 119.99525 * 6.15362 * 17 16 10 19 19 C 1.50699 * 120.00574 * 186.15922 * 17 16 10 20 20 F 1.39898 * 109.47179 * 179.97438 * 19 17 16 21 21 F 1.39899 * 109.46862 * 299.99896 * 19 17 16 22 22 F 1.39909 * 109.46960 * 59.99703 * 19 17 16 23 23 H 0.97000 * 120.00036 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47528 * 300.00562 * 9 7 2 25 25 H 1.09005 * 109.46915 * 60.00340 * 9 7 2 26 26 H 1.08999 * 109.49833 * 305.52855 * 12 10 9 27 27 H 1.08998 * 109.50079 * 65.59441 * 12 10 9 28 28 H 1.09000 * 109.46008 * 181.38659 * 13 12 10 29 29 H 1.08995 * 109.45386 * 301.35775 * 13 12 10 30 30 H 1.09002 * 109.49967 * 58.58797 * 14 13 12 31 31 H 1.08995 * 109.49478 * 178.68289 * 14 13 12 32 32 H 1.08996 * 109.59185 * 174.42102 * 15 14 13 33 33 H 1.08997 * 109.58920 * 294.70903 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1941 0.0056 8 1 3.0846 -1.1941 0.0052 9 6 1.2511 -2.4991 0.0124 10 6 2.2453 -3.6620 0.0184 11 1 2.9985 -3.5028 -0.7534 12 6 1.5024 -4.9742 -0.2519 13 6 2.4760 -6.1462 -0.1071 14 6 3.0209 -6.1852 1.3225 15 6 3.7810 -4.8868 1.6107 16 7 2.8943 -3.7483 1.3337 17 6 2.6804 -2.8013 2.2684 18 8 1.8623 -1.9280 2.0708 19 6 3.4578 -2.8273 3.5592 20 9 3.0642 -1.7516 4.3624 21 9 3.2060 -4.0282 4.2311 22 9 4.8254 -2.7258 3.2820 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6247 -2.5525 0.9028 25 1 0.6241 -2.5612 -0.8771 26 1 0.6891 -5.0862 0.4650 27 1 1.0964 -4.9608 -1.2634 28 1 1.9557 -7.0793 -0.3230 29 1 3.3020 -6.0205 -0.8070 30 1 2.1933 -6.2858 2.0247 31 1 3.6961 -7.0338 1.4313 32 1 4.0859 -4.8663 2.6569 33 1 4.6624 -4.8298 0.9720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260045708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -166.496235 kcal Electronic energy + Delta-G solvation = -22113.265666 eV Core-core repulsion = 18338.963812 eV Total energy + Delta-G solvation = -3774.301855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.89584 -47.41304 -47.32050 -39.87997 -36.93484 -33.73141 -32.56741 -31.42268 -27.88389 -26.53583 -24.52905 -23.15195 -21.78298 -20.78965 -19.61547 -18.31788 -18.19511 -17.29635 -16.76526 -15.43011 -15.01775 -14.72299 -14.61417 -14.11665 -14.02627 -13.76407 -13.69430 -13.57016 -13.47736 -13.38513 -13.24973 -12.60499 -12.51041 -12.40097 -11.73387 -11.55040 -11.16493 -10.74655 -10.69014 -10.62727 -10.42167 -10.11116 -9.75306 -8.69689 -8.43963 -8.17745 -7.92093 -6.31170 -3.80922 2.64513 2.76338 3.47787 3.51362 3.53935 3.65089 4.19110 4.53034 4.59308 4.69563 4.87638 5.01450 5.09553 5.38235 5.50030 5.56014 5.61060 5.80915 5.94726 5.97783 6.11297 6.18893 6.24203 6.50738 6.60577 6.84415 7.27482 7.65693 7.80803 8.18354 8.43551 8.60684 8.91779 9.70948 11.09985 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.010077 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.288395 B = 2777.973646 C = 3832.648466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.021 3.979 3 Si 1.062 2.938 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.041 0.959 9 C 0.002 3.998 10 C 0.164 3.836 11 H 0.065 0.935 12 C -0.133 4.133 13 C -0.118 4.118 14 C -0.131 4.131 15 C 0.098 3.902 16 N -0.590 5.590 17 C 0.413 3.587 18 O -0.366 6.366 19 C 0.437 3.563 20 F -0.163 7.163 21 F -0.182 7.182 22 F -0.183 7.183 23 H 0.270 0.730 24 H 0.043 0.957 25 H 0.008 0.992 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -12.082 3.414 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.891 3.109 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.576 4.576 8 H 0.060 0.940 9 C -0.034 4.034 10 C 0.063 3.937 11 H 0.083 0.917 12 C -0.171 4.171 13 C -0.156 4.156 14 C -0.169 4.169 15 C -0.026 4.026 16 N -0.328 5.328 17 C 0.192 3.808 18 O -0.231 6.231 19 C 0.379 3.621 20 F -0.144 7.144 21 F -0.163 7.163 22 F -0.164 7.164 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.651 -9.900 3.332 12.383 hybrid contribution 0.673 -1.764 0.413 1.933 sum 7.324 -11.664 3.746 14.273 Atomic orbital electron populations 1.70709 1.06905 1.30662 1.45375 1.25639 0.96483 1.02262 0.94034 0.83634 0.74696 0.75646 0.76884 1.21375 1.21644 1.21007 1.21835 0.93530 0.91870 1.50366 0.94021 1.19925 0.94574 0.91872 0.97072 1.21439 0.95338 0.95628 0.81345 0.91705 1.22065 0.98364 0.94686 1.02025 1.21526 0.99264 0.98469 0.96345 1.21871 1.00424 0.96783 0.97815 1.21854 0.92905 0.85959 1.01848 1.47476 1.48028 1.22883 1.14403 1.20038 0.89413 0.85778 0.85526 1.91233 1.28759 1.33315 1.69797 1.21418 0.78410 0.73657 0.88631 1.93199 1.90620 1.55624 1.74992 1.93118 1.93946 1.46424 1.82861 1.93182 1.33764 1.95781 1.93699 0.91981 0.93893 0.97351 0.91810 0.91017 0.92142 0.91962 0.91477 0.91088 0.90196 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.65 55.43 0.76 -26.95 16 2 C 0.02 0.61 5.32 -17.82 -0.09 0.52 16 3 Si 1.06 26.27 29.90 -169.99 -5.08 21.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.54 -15.01 5.75 -34.44 -0.20 -15.21 16 8 H 0.04 1.18 7.73 -52.48 -0.41 0.77 16 9 C 0.00 0.06 3.28 -27.89 -0.09 -0.04 16 10 C 0.16 3.21 2.84 -67.60 -0.19 3.02 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.13 -2.07 5.35 -26.60 -0.14 -2.22 16 13 C -0.12 -1.45 5.88 -26.69 -0.16 -1.60 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 15 C 0.10 1.38 5.85 -3.71 -0.02 1.36 16 16 N -0.59 -10.98 2.97 -165.22 -0.49 -11.47 16 17 C 0.41 8.77 6.80 -10.99 -0.07 8.70 16 18 O -0.37 -9.46 10.18 5.55 0.06 -9.40 16 19 C 0.44 8.05 2.79 36.00 0.10 8.15 16 20 F -0.16 -3.23 16.92 2.25 0.04 -3.19 16 21 F -0.18 -2.93 15.29 2.25 0.03 -2.90 16 22 F -0.18 -3.15 16.35 2.25 0.04 -3.12 16 23 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 24 H 0.04 1.17 5.97 -51.94 -0.31 0.86 16 25 H 0.01 0.22 7.97 -51.93 -0.41 -0.20 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.08 4.67 -51.93 -0.24 0.84 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -30.89 275.18 -5.38 -36.27 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -3.84 Total: -5.53 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.03 Total: 0.96 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.27 Total: -38.41 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.11 Total: -9.21 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.08 Total: 21.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.89 -5.38 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.225 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds