Wall clock time and date at job start Mon Mar 30 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47270 * 90.00077 * 3 2 1 5 5 H 1.48500 * 109.47288 * 210.00736 * 3 2 1 6 6 H 1.48502 * 109.47183 * 330.00230 * 3 2 1 7 7 C 1.37879 * 119.99987 * 179.72951 * 2 1 3 8 8 H 1.08005 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47204 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.58576 * 311.34999 * 10 9 7 12 12 C 1.53196 * 109.58505 * 191.06904 * 10 9 7 13 13 C 1.53050 * 109.31080 * 185.58071 * 12 10 9 14 14 C 1.53036 * 109.53856 * 61.36252 * 13 12 10 15 15 C 1.53190 * 109.31555 * 298.63588 * 14 13 12 16 16 N 1.46921 * 109.58376 * 71.78147 * 10 9 7 17 17 C 1.34772 * 120.63535 * 353.39452 * 16 10 9 18 18 O 1.21290 * 119.99525 * 6.15362 * 17 16 10 19 19 C 1.50699 * 120.00574 * 186.15922 * 17 16 10 20 20 F 1.39898 * 109.47179 * 179.97438 * 19 17 16 21 21 F 1.39899 * 109.46862 * 299.99896 * 19 17 16 22 22 F 1.39909 * 109.46960 * 59.99703 * 19 17 16 23 23 H 0.97000 * 120.00036 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47528 * 300.00562 * 9 7 2 25 25 H 1.09005 * 109.46915 * 60.00340 * 9 7 2 26 26 H 1.08999 * 109.49833 * 305.52855 * 12 10 9 27 27 H 1.08998 * 109.50079 * 65.59441 * 12 10 9 28 28 H 1.09000 * 109.46008 * 181.38659 * 13 12 10 29 29 H 1.08995 * 109.45386 * 301.35775 * 13 12 10 30 30 H 1.09002 * 109.49967 * 58.58797 * 14 13 12 31 31 H 1.08995 * 109.49478 * 178.68289 * 14 13 12 32 32 H 1.08996 * 109.59185 * 174.42102 * 15 14 13 33 33 H 1.08997 * 109.58920 * 294.70903 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1941 0.0056 8 1 3.0846 -1.1941 0.0052 9 6 1.2511 -2.4991 0.0124 10 6 2.2453 -3.6620 0.0184 11 1 2.9985 -3.5028 -0.7534 12 6 1.5024 -4.9742 -0.2519 13 6 2.4760 -6.1462 -0.1071 14 6 3.0209 -6.1852 1.3225 15 6 3.7810 -4.8868 1.6107 16 7 2.8943 -3.7483 1.3337 17 6 2.6804 -2.8013 2.2684 18 8 1.8623 -1.9280 2.0708 19 6 3.4578 -2.8273 3.5592 20 9 3.0642 -1.7516 4.3624 21 9 3.2060 -4.0282 4.2311 22 9 4.8254 -2.7258 3.2820 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6247 -2.5525 0.9028 25 1 0.6241 -2.5612 -0.8771 26 1 0.6891 -5.0862 0.4650 27 1 1.0964 -4.9608 -1.2634 28 1 1.9557 -7.0793 -0.3230 29 1 3.3020 -6.0205 -0.8070 30 1 2.1933 -6.2858 2.0247 31 1 3.6961 -7.0338 1.4313 32 1 4.0859 -4.8663 2.6569 33 1 4.6624 -4.8298 0.9720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260045708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:48 Heat of formation + Delta-G solvation = -185.927147 kcal Electronic energy + Delta-G solvation = -22114.108254 eV Core-core repulsion = 18338.963812 eV Total energy + Delta-G solvation = -3775.144442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.40806 -48.90872 -48.83670 -41.50276 -38.43680 -35.68682 -33.97308 -33.07011 -29.43524 -28.29173 -26.03637 -24.83360 -23.40471 -22.19821 -21.02887 -19.83194 -19.71361 -18.87511 -18.77634 -16.98431 -16.59925 -16.21887 -15.92541 -15.68709 -15.60320 -15.42853 -15.22843 -15.07182 -14.98146 -14.82236 -14.62850 -14.33856 -14.08093 -13.95983 -13.52587 -13.13942 -12.71282 -12.53295 -12.07891 -11.99580 -11.81723 -11.56723 -11.39768 -10.72411 -10.49676 -10.06023 -9.57999 -8.55308 -6.04919 1.01596 1.10233 1.46454 1.58158 1.70767 1.99377 2.58144 2.63725 3.02318 3.16237 3.37555 3.77073 3.94462 3.96663 4.11656 4.31089 4.39887 4.56664 4.75112 4.86354 4.89147 5.04053 5.09243 5.15275 5.22667 5.34312 5.46702 5.75494 6.00188 6.20100 6.30924 6.70223 6.90887 7.56139 8.86691 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.010077 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.288395 B = 2777.973646 C = 3832.648466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.036 4.036 3 Si 1.101 2.899 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.033 0.967 9 C 0.010 3.990 10 C 0.165 3.835 11 H 0.068 0.932 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.086 3.914 16 N -0.584 5.584 17 C 0.420 3.580 18 O -0.430 6.430 19 C 0.452 3.548 20 F -0.171 7.171 21 F -0.163 7.163 22 F -0.169 7.169 23 H 0.253 0.747 24 H 0.015 0.985 25 H -0.011 1.011 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -14.478 3.626 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.233 4.233 3 Si 0.924 3.076 4 H -0.214 1.214 5 H -0.192 1.192 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.027 4.027 10 C 0.063 3.937 11 H 0.086 0.914 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.035 4.035 16 N -0.320 5.320 17 C 0.200 3.800 18 O -0.299 6.299 19 C 0.393 3.607 20 F -0.152 7.152 21 F -0.144 7.144 22 F -0.150 7.150 23 H 0.063 0.937 24 H 0.033 0.967 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.092 -12.358 3.531 15.743 hybrid contribution 0.030 -1.230 0.452 1.311 sum 9.123 -13.587 3.984 16.844 Atomic orbital electron populations 1.70837 1.07843 1.29538 1.49541 1.26865 0.96635 1.05799 0.94028 0.83150 0.74691 0.72671 0.77045 1.21363 1.19243 1.20598 1.21984 0.92972 0.93117 1.49280 0.94899 1.19717 0.95060 0.93330 0.94630 1.21308 0.94569 0.95816 0.81966 0.91444 1.21998 0.98558 0.93975 1.01993 1.21519 0.98846 0.97559 0.96982 1.21893 1.00705 0.96488 0.97260 1.22300 0.93072 0.85171 1.02951 1.47777 1.47529 1.23333 1.13372 1.20640 0.88082 0.85230 0.86071 1.91263 1.31294 1.35323 1.72051 1.20712 0.78545 0.74121 0.87272 1.93193 1.90798 1.56261 1.74978 1.93164 1.93882 1.45080 1.82307 1.93211 1.32435 1.95781 1.93620 0.93721 0.96737 0.99302 0.93056 0.90452 0.89535 0.90641 0.92183 0.87167 0.89399 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.64 13.65 21.45 0.29 -60.34 16 2 C -0.04 -2.17 5.32 84.65 0.45 -1.72 16 3 Si 1.10 54.03 29.90 68.60 2.05 56.08 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 7 C -0.54 -30.77 5.75 25.60 0.15 -30.63 16 8 H 0.03 1.88 7.73 -2.91 -0.02 1.86 16 9 C 0.01 0.49 3.28 29.85 0.10 0.59 16 10 C 0.17 6.36 2.84 44.98 0.13 6.49 16 11 H 0.07 2.58 8.10 -2.39 -0.02 2.57 16 12 C -0.13 -3.74 5.35 30.68 0.16 -3.57 16 13 C -0.11 -2.24 5.88 30.62 0.18 -2.06 16 14 C -0.13 -2.38 6.08 30.67 0.19 -2.19 16 15 C 0.09 2.09 5.85 86.36 0.50 2.59 16 16 N -0.58 -20.76 2.97 -795.01 -2.36 -23.12 16 17 C 0.42 17.66 6.80 87.66 0.60 18.26 16 18 O -0.43 -22.92 10.18 -3.06 -0.03 -22.95 16 19 C 0.45 15.86 2.79 71.24 0.20 16.06 16 20 F -0.17 -6.65 16.92 44.97 0.76 -5.89 16 21 F -0.16 -4.81 15.29 44.97 0.69 -4.12 16 22 F -0.17 -5.37 16.35 44.97 0.74 -4.64 16 23 H 0.25 16.59 7.22 -92.71 -0.67 15.92 16 24 H 0.01 0.84 5.97 -2.47 -0.01 0.83 16 25 H -0.01 -0.60 7.97 -2.38 -0.02 -0.62 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 2.01 4.67 -2.39 -0.01 2.00 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.92 275.18 6.02 -64.90 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: 1.23 Total: -3.75 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 2.65 Total: 3.82 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.07 Total: -83.47 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.03 Total: -22.95 kcal Atomic # 9 Polarization: -16.83 SS G_CDS: 2.18 Total: -14.65 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 2.05 Total: 56.08 kcal Total: -70.92 6.02 -64.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.024 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds