Wall clock time and date at job start Mon Mar 30 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47230 * 2 1 4 4 H 1.09002 * 115.55624 * 29.31195 * 3 2 1 5 5 C 1.53069 * 117.49484 * 243.59565 * 3 2 1 6 6 C 1.52994 * 59.98477 * 252.51726 * 5 3 2 7 7 N 1.46497 * 117.50119 * 107.50753 * 6 5 3 8 8 C 1.36934 * 120.00284 * 80.15698 * 7 6 5 9 9 H 1.08007 * 119.99913 * 3.96191 * 8 7 6 10 10 C 1.38808 * 120.00084 * 183.95084 * 8 7 6 11 11 N 1.31618 * 120.00480 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99915 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47395 * 60.00338 * 12 10 8 14 14 H 1.48500 * 109.47233 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46893 * 300.00276 * 12 10 8 16 16 C 1.50706 * 117.49704 * 252.50163 * 6 5 3 17 17 C 1.38247 * 119.98600 * 18.20370 * 16 6 5 18 18 C 1.38208 * 120.00908 * 180.02562 * 17 16 6 19 19 C 1.38356 * 119.98984 * 0.25220 * 18 17 16 20 20 Cl 1.73602 * 120.01377 * 179.69937 * 19 18 17 21 21 C 1.38350 * 119.97155 * 359.47499 * 19 18 17 22 22 C 1.38211 * 119.98793 * 0.54844 * 21 19 18 23 23 H 1.09002 * 109.47599 * 300.00253 * 1 2 3 24 24 H 1.09004 * 109.46818 * 59.99971 * 1 2 3 25 25 H 1.08999 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47659 * 240.00245 * 2 1 3 27 27 H 1.08998 * 109.46897 * 119.99564 * 2 1 3 28 28 H 1.09006 * 117.51052 * 145.03266 * 5 3 2 29 29 H 1.08997 * 117.51336 * 359.97438 * 5 3 2 30 30 H 0.97004 * 119.99690 * 260.17023 * 7 6 5 31 31 H 0.96994 * 120.00582 * 180.02562 * 11 10 8 32 32 H 1.07994 * 119.99154 * 0.02562 * 17 16 6 33 33 H 1.08004 * 120.00384 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.00438 * 180.24673 * 21 19 18 35 35 H 1.08002 * 119.99854 * 179.72310 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8448 1.9075 -1.2161 6 6 3.5501 1.6579 0.1184 7 7 4.3970 0.4672 0.2236 8 6 5.6670 0.4829 -0.2883 9 1 6.0672 1.3921 -0.7122 10 6 6.4401 -0.6697 -0.2622 11 7 5.9525 -1.7778 0.2541 12 14 8.1729 -0.6480 -0.9598 13 1 8.9906 0.3491 -0.2235 14 1 8.7825 -1.9942 -0.8130 15 1 8.1228 -0.2820 -2.3982 16 6 4.0227 2.8620 0.8916 17 6 3.5047 4.1121 0.6082 18 6 3.9382 5.2168 1.3166 19 6 4.8945 5.0722 2.3060 20 17 5.4452 6.4606 3.1909 21 6 5.4083 3.8202 2.5930 22 6 4.9745 2.7162 1.8836 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.7226 2.9427 -1.5350 29 1 3.0112 1.1857 -2.0157 30 1 4.0581 -0.3324 0.6557 31 1 6.4928 -2.5831 0.2726 32 1 2.7613 4.2253 -0.1669 33 1 3.5338 6.1934 1.0948 34 1 6.1519 3.7062 3.3679 35 1 5.3788 1.7394 2.1044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309432989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:13 Heat of formation + Delta-G solvation = 43.154198 kcal Electronic energy + Delta-G solvation = -17656.715627 eV Core-core repulsion = 14874.070803 eV Total energy + Delta-G solvation = -2782.644825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.48370 -37.42988 -36.05481 -33.51099 -32.01752 -30.76784 -29.58787 -29.39992 -24.15661 -23.63678 -22.52778 -22.14439 -20.17816 -18.87301 -17.29962 -16.81974 -15.44476 -14.97663 -14.54732 -14.34485 -13.90231 -13.81224 -13.23128 -13.10863 -13.08359 -12.59308 -12.15103 -11.57406 -11.46103 -11.29196 -11.23954 -11.01293 -10.91054 -10.84407 -10.58287 -10.46249 -10.26797 -9.95187 -9.66506 -9.38489 -8.94627 -8.64660 -7.92343 -7.08363 -5.85478 -3.16360 1.50730 1.69783 2.36747 3.40133 3.45241 3.45989 3.92006 4.45582 4.67282 4.97079 5.09682 5.20331 5.24509 5.46249 5.48900 5.58610 5.63323 5.70783 5.81066 5.86030 6.00636 6.08025 6.14726 6.28403 6.30611 6.39264 6.44989 6.55420 6.57354 6.65444 6.89209 6.89908 7.14091 7.28877 7.69412 8.33102 9.44423 9.97889 10.34218 11.36113 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.007276 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.824251 B = 3847.318038 C = 5551.924054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.143 4.143 4 H 0.097 0.903 5 C -0.188 4.188 6 C 0.174 3.826 7 N -0.685 5.685 8 C -0.237 4.237 9 H 0.071 0.929 10 C -0.007 4.007 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C -0.032 4.032 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.047 4.047 20 Cl -0.092 7.092 21 C -0.117 4.117 22 C -0.072 4.072 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.390 0.610 31 H 0.257 0.743 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 10.431 2.422 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.161 4.161 4 H 0.115 0.885 5 C -0.228 4.228 6 C 0.080 3.920 7 N -0.324 5.324 8 C -0.368 4.368 9 H 0.089 0.911 10 C -0.204 4.204 11 N -0.578 5.578 12 Si 0.736 3.264 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.035 4.035 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.073 4.073 20 Cl -0.063 7.063 21 C -0.135 4.135 22 C -0.090 4.090 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.226 0.774 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.190 10.507 2.427 12.961 hybrid contribution 1.038 -0.087 -0.243 1.070 sum -6.152 10.420 2.185 12.296 Atomic orbital electron populations 1.21746 0.96374 1.01023 1.01160 1.20975 0.94450 0.94360 1.02837 1.22651 0.92686 0.97923 1.02883 0.88484 1.23634 1.05226 1.00932 0.92995 1.18622 0.88809 0.88291 0.96262 1.41719 1.12430 1.09644 1.68645 1.19113 0.89633 0.95725 1.32292 0.91124 1.24728 0.98619 0.95584 1.01444 1.69640 1.37114 1.00725 1.50331 0.86301 0.84515 0.76607 0.78997 1.21123 1.21669 1.21203 1.19996 0.94997 0.93716 0.94812 1.20962 1.00963 0.91655 0.99900 1.20844 0.97547 0.99248 0.96086 1.20843 1.00637 0.87907 0.97961 1.98327 1.89341 1.43127 1.75542 1.21080 1.00700 0.90815 1.00950 1.21245 0.95057 0.99214 0.93483 0.93204 0.93086 0.93106 0.91314 0.91592 0.89920 0.88500 0.77375 0.93310 0.85572 0.85777 0.85556 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.87 37.15 0.37 -1.47 16 2 C -0.09 -1.40 5.41 -26.73 -0.14 -1.55 16 3 C -0.14 -2.30 5.24 -90.58 -0.47 -2.77 16 4 H 0.10 1.41 8.05 -51.93 -0.42 0.99 16 5 C -0.19 -3.22 9.40 -26.70 -0.25 -3.47 16 6 C 0.17 3.34 2.60 -132.97 -0.35 2.99 16 7 N -0.69 -15.98 4.41 -48.31 -0.21 -16.19 16 8 C -0.24 -6.19 8.94 -15.06 -0.13 -6.32 16 9 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 12 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.03 -0.59 5.52 -104.61 -0.58 -1.16 16 17 C -0.12 -1.78 9.08 -39.59 -0.36 -2.14 16 18 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 19 C -0.05 -0.72 6.32 -39.50 -0.25 -0.97 16 20 Cl -0.09 -1.24 28.96 -51.86 -1.50 -2.74 16 21 C -0.12 -1.91 9.83 -39.55 -0.39 -2.29 16 22 C -0.07 -1.33 9.08 -39.59 -0.36 -1.69 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 27 H 0.07 1.12 7.62 -51.93 -0.40 0.73 16 28 H 0.08 1.24 6.49 -51.93 -0.34 0.90 16 29 H 0.10 1.81 8.03 -51.93 -0.42 1.39 16 30 H 0.39 9.70 6.92 -40.82 -0.28 9.41 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.13 1.68 6.34 -52.49 -0.33 1.34 16 33 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.15 3.06 7.04 -52.49 -0.37 2.69 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -27.26 308.96 -9.38 -36.64 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.62 Total: 10.05 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.40 Total: -23.24 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.51 Total: -42.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.26 -9.38 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -27.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds