Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47230 * 2 1 4 4 H 1.09002 * 115.55624 * 29.31195 * 3 2 1 5 5 C 1.53069 * 117.49484 * 243.59565 * 3 2 1 6 6 C 1.52994 * 59.98477 * 252.51726 * 5 3 2 7 7 N 1.46497 * 117.50119 * 107.50753 * 6 5 3 8 8 C 1.36934 * 120.00284 * 80.15698 * 7 6 5 9 9 H 1.08007 * 119.99913 * 3.96191 * 8 7 6 10 10 C 1.38808 * 120.00084 * 183.95084 * 8 7 6 11 11 N 1.31618 * 120.00480 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99915 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47395 * 60.00338 * 12 10 8 14 14 H 1.48500 * 109.47233 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46893 * 300.00276 * 12 10 8 16 16 C 1.50706 * 117.49704 * 252.50163 * 6 5 3 17 17 C 1.38247 * 119.98600 * 18.20370 * 16 6 5 18 18 C 1.38208 * 120.00908 * 180.02562 * 17 16 6 19 19 C 1.38356 * 119.98984 * 0.25220 * 18 17 16 20 20 Cl 1.73602 * 120.01377 * 179.69937 * 19 18 17 21 21 C 1.38350 * 119.97155 * 359.47499 * 19 18 17 22 22 C 1.38211 * 119.98793 * 0.54844 * 21 19 18 23 23 H 1.09002 * 109.47599 * 300.00253 * 1 2 3 24 24 H 1.09004 * 109.46818 * 59.99971 * 1 2 3 25 25 H 1.08999 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47659 * 240.00245 * 2 1 3 27 27 H 1.08998 * 109.46897 * 119.99564 * 2 1 3 28 28 H 1.09006 * 117.51052 * 145.03266 * 5 3 2 29 29 H 1.08997 * 117.51336 * 359.97438 * 5 3 2 30 30 H 0.97004 * 119.99690 * 260.17023 * 7 6 5 31 31 H 0.96994 * 120.00582 * 180.02562 * 11 10 8 32 32 H 1.07994 * 119.99154 * 0.02562 * 17 16 6 33 33 H 1.08004 * 120.00384 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.00438 * 180.24673 * 21 19 18 35 35 H 1.08002 * 119.99854 * 179.72310 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8448 1.9075 -1.2161 6 6 3.5501 1.6579 0.1184 7 7 4.3970 0.4672 0.2236 8 6 5.6670 0.4829 -0.2883 9 1 6.0672 1.3921 -0.7122 10 6 6.4401 -0.6697 -0.2622 11 7 5.9525 -1.7778 0.2541 12 14 8.1729 -0.6480 -0.9598 13 1 8.9906 0.3491 -0.2235 14 1 8.7825 -1.9942 -0.8130 15 1 8.1228 -0.2820 -2.3982 16 6 4.0227 2.8620 0.8916 17 6 3.5047 4.1121 0.6082 18 6 3.9382 5.2168 1.3166 19 6 4.8945 5.0722 2.3060 20 17 5.4452 6.4606 3.1909 21 6 5.4083 3.8202 2.5930 22 6 4.9745 2.7162 1.8836 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.7226 2.9427 -1.5350 29 1 3.0112 1.1857 -2.0157 30 1 4.0581 -0.3324 0.6557 31 1 6.4928 -2.5831 0.2726 32 1 2.7613 4.2253 -0.1669 33 1 3.5338 6.1934 1.0948 34 1 6.1519 3.7062 3.3679 35 1 5.3788 1.7394 2.1044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309432989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = 30.368460 kcal Electronic energy + Delta-G solvation = -17657.270058 eV Core-core repulsion = 14874.070803 eV Total energy + Delta-G solvation = -2783.199256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81985 -38.75290 -37.21831 -35.34841 -33.37969 -32.15655 -31.22585 -30.74563 -26.07797 -24.83786 -23.93439 -23.41335 -21.49936 -20.31935 -19.17878 -18.20190 -16.94858 -16.29192 -16.15908 -15.60930 -15.54891 -15.16453 -14.85340 -14.40446 -14.36236 -13.92644 -13.39315 -13.09758 -12.86839 -12.74237 -12.68511 -12.48560 -12.40208 -12.21908 -12.12762 -11.90414 -11.79431 -11.58103 -11.34258 -10.80198 -10.69335 -9.89717 -9.30564 -8.92531 -7.93968 -5.22662 0.24514 0.44453 1.19790 1.45691 1.46566 1.52687 2.52493 2.63633 3.21961 3.40604 3.60946 3.73256 3.96383 4.04688 4.19102 4.30826 4.38185 4.50995 4.55641 4.58797 4.71561 4.80081 4.90155 5.01137 5.05127 5.14712 5.24870 5.30056 5.34276 5.36149 5.47304 5.57513 5.62074 5.83531 5.96768 6.29267 7.34630 8.08980 8.33170 9.28471 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.007276 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.824251 B = 3847.318038 C = 5551.924054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.121 4.121 4 H 0.126 0.874 5 C -0.179 4.179 6 C 0.141 3.859 7 N -0.695 5.695 8 C -0.219 4.219 9 H 0.066 0.934 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.960 3.040 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.281 1.281 16 C -0.047 4.047 17 C -0.110 4.110 18 C -0.107 4.107 19 C -0.051 4.051 20 Cl -0.073 7.073 21 C -0.120 4.120 22 C -0.098 4.098 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.378 0.622 31 H 0.250 0.750 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 13.313 1.992 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.139 4.139 4 H 0.144 0.856 5 C -0.218 4.218 6 C 0.049 3.951 7 N -0.333 5.333 8 C -0.351 4.351 9 H 0.084 0.916 10 C -0.260 4.260 11 N -0.617 5.617 12 Si 0.790 3.210 13 H -0.208 1.208 14 H -0.222 1.222 15 H -0.207 1.207 16 C -0.050 4.050 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.077 4.077 20 Cl -0.044 7.044 21 C -0.138 4.138 22 C -0.116 4.116 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.211 0.789 31 H 0.059 0.941 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.151 0.849 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.609 13.444 1.987 16.088 hybrid contribution 1.427 -0.857 -0.059 1.666 sum -7.182 12.587 1.928 14.620 Atomic orbital electron populations 1.21682 0.93316 1.01968 1.02475 1.20949 0.97068 0.93970 1.00702 1.22778 0.91068 0.98463 1.01627 0.85647 1.23615 1.04277 1.02143 0.91783 1.18965 0.90253 0.87555 0.98335 1.41738 1.12235 1.10838 1.68476 1.19281 0.90687 0.95021 1.30081 0.91570 1.25370 1.01870 0.95643 1.03110 1.69778 1.38111 1.01083 1.52706 0.85409 0.81013 0.76129 0.78441 1.20789 1.22224 1.20742 1.19934 0.95708 0.94418 0.94930 1.21168 1.00953 0.90405 1.00270 1.21207 0.96310 1.00361 0.94676 1.20952 1.00555 0.87979 0.98213 1.98336 1.89187 1.41757 1.75158 1.21112 1.00892 0.90947 1.00892 1.21001 0.96750 0.98458 0.95420 0.91754 0.91767 0.92505 0.93741 0.93588 0.86834 0.90606 0.78859 0.94085 0.82850 0.82502 0.84858 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.87 71.98 0.71 -2.46 16 2 C -0.09 -2.80 5.41 30.59 0.17 -2.64 16 3 C -0.12 -3.69 5.24 -10.77 -0.06 -3.75 16 4 H 0.13 3.16 8.05 -2.39 -0.02 3.14 16 5 C -0.18 -5.82 9.40 30.62 0.29 -5.53 16 6 C 0.14 5.36 2.60 2.86 0.01 5.37 16 7 N -0.70 -33.60 4.41 -306.76 -1.35 -34.96 16 8 C -0.22 -11.79 8.94 84.03 0.75 -11.03 16 9 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 10 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 11 N -0.97 -57.88 13.06 21.65 0.28 -57.59 16 12 Si 0.96 46.11 29.55 68.60 2.03 48.14 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 C -0.05 -1.66 5.52 -19.86 -0.11 -1.77 16 17 C -0.11 -2.98 9.08 22.26 0.20 -2.78 16 18 C -0.11 -2.66 9.83 22.29 0.22 -2.44 16 19 C -0.05 -1.41 6.32 22.32 0.14 -1.26 16 20 Cl -0.07 -1.76 28.96 -2.72 -0.08 -1.84 16 21 C -0.12 -3.83 9.83 22.29 0.22 -3.61 16 22 C -0.10 -3.69 9.08 22.26 0.20 -3.48 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.59 7.88 -2.39 -0.02 1.57 16 27 H 0.05 1.62 7.62 -2.39 -0.02 1.60 16 28 H 0.11 2.96 6.49 -2.38 -0.02 2.95 16 29 H 0.08 2.80 8.03 -2.39 -0.02 2.78 16 30 H 0.38 19.81 6.92 -92.71 -0.64 19.17 16 31 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.15 3.29 6.34 -2.91 -0.02 3.27 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.11 4.92 7.04 -2.91 -0.02 4.90 16 Total: -1.00 -60.61 308.96 4.54 -56.07 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.45 Total: 28.91 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.21 Total: -38.73 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -1.07 Total: -92.55 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -60.61 4.54 -56.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.441 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds