Wall clock time and date at job start Mon Mar 30 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46899 * 109.47071 * 120.00135 * 2 1 3 5 5 C 1.46896 * 110.99850 * 275.00148 * 4 2 1 6 6 C 1.53004 * 109.46999 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47004 * 54.99944 * 6 5 4 8 8 C 1.47199 * 109.47054 * 294.99557 * 6 5 4 9 9 N 4.90932 * 82.27552 * 119.13682 * 2 1 3 10 10 C 1.53006 * 109.46941 * 175.00019 * 6 5 4 11 11 C 1.50695 * 109.46854 * 185.00048 * 10 6 5 12 12 H 1.08005 * 120.00472 * 359.97438 * 11 10 6 13 13 C 1.37878 * 120.00186 * 179.97438 * 11 10 6 14 14 N 1.31515 * 120.00300 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99767 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47255 * 89.99798 * 15 13 11 17 17 H 1.48499 * 109.47051 * 210.00055 * 15 13 11 18 18 H 1.48506 * 109.46878 * 330.00161 * 15 13 11 19 19 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 20 20 C 1.33635 * 122.74806 * 85.00520 * 19 2 1 21 21 S 1.76201 * 107.92337 * 179.97438 * 20 19 2 22 22 C 1.70972 * 90.28069 * 359.97438 * 21 20 19 23 23 N 1.29032 * 110.17047 * 359.73377 * 22 21 20 24 24 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 25 25 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 27 27 H 1.00895 * 111.00032 * 151.04701 * 4 2 1 28 28 H 1.08996 * 109.47108 * 299.99859 * 5 4 2 29 29 H 1.08995 * 109.47422 * 59.99766 * 5 4 2 30 30 H 1.09002 * 109.46888 * 304.99648 * 10 6 5 31 31 H 1.08997 * 109.47404 * 64.99608 * 10 6 5 32 32 H 0.97002 * 119.99483 * 180.02562 * 14 13 11 33 33 H 1.08003 * 126.04211 * 359.97438 * 20 19 2 34 34 H 1.08004 * 124.91651 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2225 2.3468 6 6 2.5950 -0.5333 3.5745 7 1 3.5505 -1.0021 3.3396 8 6 1.6207 -1.5689 3.9552 9 7 0.8702 -2.3686 4.2492 10 6 2.7788 0.4456 4.7360 11 6 3.3986 -0.2741 5.9059 12 1 3.6372 -1.3246 5.8290 13 6 3.6613 0.4086 7.0747 14 7 4.2026 -0.2193 8.0956 15 14 3.2493 2.2258 7.2076 16 1 1.8640 2.3833 7.7188 17 1 4.1993 2.8817 8.1418 18 1 3.3573 2.8571 5.8677 19 6 2.0323 -0.7105 -1.2305 20 6 2.1810 -0.0979 -2.4089 21 16 2.7865 -1.2831 -3.5636 22 6 2.7801 -2.4842 -2.3468 23 7 2.3676 -1.9849 -1.2309 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.9173 -1.1205 1.0287 28 1 2.7588 1.0461 2.1182 29 1 1.0871 0.6163 2.5525 30 1 3.4313 1.2611 4.4240 31 1 1.8091 0.8479 5.0291 32 1 4.3870 0.2610 8.9180 33 1 1.9678 0.9403 -2.6167 34 1 3.0826 -3.5111 -2.4903 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849324173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:32 Heat of formation + Delta-G solvation = 67.250520 kcal Electronic energy + Delta-G solvation = -16981.826716 eV Core-core repulsion = 14234.563244 eV Total energy + Delta-G solvation = -2747.263472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25218 -37.44214 -35.52833 -33.69916 -32.30771 -30.74035 -29.06916 -26.89262 -25.56408 -23.33102 -21.94650 -21.38496 -19.67172 -18.26824 -17.00549 -16.83251 -16.10498 -15.23068 -14.97443 -14.73000 -14.11275 -13.97860 -13.51430 -13.38843 -13.10302 -12.60742 -12.48251 -12.19583 -12.11535 -11.99897 -11.55360 -11.33681 -11.25608 -11.08758 -10.76581 -10.26037 -9.95998 -9.84404 -9.72713 -9.70612 -9.30670 -9.09546 -8.59969 -8.31004 -6.08675 -4.09124 0.46830 1.14428 1.46815 2.59028 3.28000 3.35143 3.35807 3.77364 3.85535 3.92467 4.20981 4.39713 4.68917 4.86041 5.00141 5.07110 5.20423 5.26210 5.26857 5.51994 5.60326 5.67338 5.76438 5.89678 5.95008 6.23604 6.26958 6.33089 6.96384 7.02820 7.13767 7.46955 7.60235 7.65990 8.43238 8.62282 8.95560 9.51117 11.04502 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.003764 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.950009 B = 7436.232562 C = 7579.584771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.160 3.840 3 H 0.062 0.938 4 N -0.676 5.676 5 C 0.062 3.938 6 C 0.021 3.979 7 H 0.104 0.896 8 C 0.253 3.747 9 N -0.470 5.470 10 C -0.005 4.005 11 C -0.527 4.527 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.069 3.931 20 C -0.254 4.254 21 S 0.104 5.896 22 C 0.025 3.975 23 N -0.447 5.447 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.351 0.649 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.264 0.736 33 H 0.177 0.823 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 3.449 -25.306 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 H 0.079 0.921 4 N -0.309 5.309 5 C -0.068 4.068 6 C -0.001 4.001 7 H 0.122 0.878 8 C -0.064 4.064 9 N -0.147 5.147 10 C -0.044 4.044 11 C -0.565 4.565 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.064 4.064 20 C -0.394 4.394 21 S 0.356 5.644 22 C -0.274 4.274 23 N -0.159 5.159 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.170 0.830 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.194 0.806 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.624 1.640 -25.101 25.414 hybrid contribution 0.658 2.082 0.616 2.269 sum -2.966 3.722 -24.485 24.944 Atomic orbital electron populations 1.21793 0.93243 1.02954 1.01423 1.20072 0.96103 0.94172 0.84884 0.92073 1.60429 1.34713 1.32653 1.03100 1.22193 1.01607 0.93674 0.89367 1.18926 0.93965 0.91759 0.95455 0.87822 1.28630 0.93293 0.93277 0.91222 1.80965 1.11643 1.11385 1.10703 1.19637 0.97615 0.94421 0.92688 1.21041 1.41110 0.98137 0.96207 0.90757 1.24996 0.94403 0.98206 0.95541 1.69911 1.43120 1.36645 1.03874 0.86813 0.78522 0.85725 0.78441 1.20236 1.21294 1.18773 1.20472 1.00653 0.89303 0.95953 1.26807 1.11437 1.05089 0.96024 1.84029 1.60326 1.02943 1.17056 1.28531 1.03293 1.04798 0.90742 1.66107 1.12335 1.11499 1.26008 0.92760 0.91667 0.91675 0.82952 0.93375 0.90384 0.94573 0.96067 0.92590 0.80574 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.40 37.16 0.35 -1.14 16 2 C 0.16 1.80 2.96 -68.86 -0.20 1.59 16 3 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 4 N -0.68 -9.17 5.83 -107.95 -0.63 -9.80 16 5 C 0.06 0.87 4.85 -3.82 -0.02 0.85 16 6 C 0.02 0.38 2.36 -93.40 -0.22 0.16 16 7 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 8 C 0.25 5.41 13.67 -20.78 -0.28 5.12 16 9 N -0.47 -11.07 18.53 42.13 0.78 -10.29 16 10 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 11 C -0.53 -14.36 9.15 -34.44 -0.32 -14.67 16 12 H 0.07 2.23 7.84 -52.48 -0.41 1.82 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 15 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 19 C 0.07 0.75 5.60 -84.23 -0.47 0.28 16 20 C -0.25 -2.18 11.14 29.12 0.32 -1.85 16 21 S 0.10 0.76 23.22 -107.50 -2.50 -1.74 16 22 C 0.03 0.22 12.23 51.59 0.63 0.85 16 23 N -0.45 -5.35 9.75 -11.90 -0.12 -5.47 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 27 H 0.35 4.79 7.94 -39.29 -0.31 4.48 16 28 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.08 1.09 7.43 -51.93 -0.39 0.71 16 30 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 31 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.18 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.20 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -33.01 309.95 -6.46 -39.47 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.37 Total: 0.71 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.40 Total: -7.10 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.81 Total: -52.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.01 -6.46 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849324173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.719 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds