Wall clock time and date at job start Mon Mar 30 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47313 * 2 1 4 4 N 1.46893 * 109.46945 * 120.00451 * 2 1 3 5 5 C 1.46910 * 110.99761 * 274.99644 * 4 2 1 6 6 C 1.53002 * 109.46906 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.47407 * 304.99784 * 6 5 4 8 8 C 1.47206 * 109.47021 * 65.00197 * 6 5 4 9 9 N 4.90932 * 135.91344 * 112.23123 * 2 1 3 10 10 C 1.52997 * 109.46817 * 185.00004 * 6 5 4 11 11 C 1.50698 * 109.46933 * 175.00167 * 10 6 5 12 12 H 1.08003 * 120.00121 * 0.02562 * 11 10 6 13 13 C 1.37882 * 119.99840 * 179.97438 * 11 10 6 14 14 N 1.31510 * 120.00071 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99922 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47013 * 60.00187 * 15 13 11 17 17 H 1.48503 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47177 * 300.00419 * 15 13 11 19 19 C 1.50702 * 109.47212 * 240.00101 * 2 1 3 20 20 C 1.35139 * 127.24762 * 99.99541 * 19 2 1 21 21 C 1.37810 * 114.75810 * 180.02562 * 20 19 2 22 22 N 1.30083 * 116.88485 * 0.02562 * 21 20 19 23 23 S 1.69605 * 107.14936 * 359.73093 * 22 21 20 24 24 H 1.09003 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47321 * 300.00106 * 1 2 3 26 26 H 1.09008 * 109.47186 * 59.99836 * 1 2 3 27 27 H 1.00897 * 111.00751 * 38.95419 * 4 2 1 28 28 H 1.08997 * 109.46998 * 60.00442 * 5 4 2 29 29 H 1.08997 * 109.46873 * 300.00074 * 5 4 2 30 30 H 1.08998 * 109.47192 * 294.99969 * 10 6 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 10 6 5 32 32 H 0.97004 * 119.99924 * 179.97438 * 14 13 11 33 33 H 1.08000 * 122.62368 * 359.97438 * 20 19 2 34 34 H 1.08008 * 121.55875 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9709 -1.4083 3.7500 8 6 3.9852 -0.9611 3.3409 9 7 5.0563 -1.2923 3.1617 10 6 2.5439 0.3851 4.7969 11 6 2.9329 -0.3940 6.0269 12 1 3.1919 -1.4392 5.9446 13 6 2.9592 0.2280 7.2572 14 7 2.6443 1.5009 7.3573 15 14 3.4407 -0.7378 8.7819 16 1 4.8184 -1.2670 8.6180 17 1 3.3901 0.1533 9.9688 18 1 2.4957 -1.8676 8.9711 19 6 2.0323 -0.7104 -1.2305 20 6 2.4810 -0.1474 -2.3741 21 6 2.8803 -1.0444 -3.3411 22 7 2.7810 -2.3080 -3.0482 23 16 2.1608 -2.4090 -1.4729 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.4496 -1.4980 1.4099 28 1 1.0871 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 3.2370 1.2148 4.6582 31 1 1.5323 0.7728 4.9173 32 1 2.6624 1.9384 8.2229 33 1 2.5227 0.9220 -2.5193 34 1 3.2580 -0.7138 -4.2975 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860051428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:13 Heat of formation + Delta-G solvation = 31.512733 kcal Electronic energy + Delta-G solvation = -16867.235735 eV Core-core repulsion = 14118.422556 eV Total energy + Delta-G solvation = -2748.813179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86559 -38.88200 -37.24827 -35.55173 -34.07620 -31.99170 -30.08513 -27.92653 -26.13481 -24.48137 -23.48559 -22.76912 -20.83347 -18.79111 -18.48504 -18.16967 -16.82902 -16.60758 -15.92335 -15.67314 -15.42435 -14.97468 -14.73551 -14.36829 -14.19559 -13.88880 -13.78549 -13.63482 -13.26949 -13.02878 -12.83941 -12.76502 -12.59478 -12.45381 -12.34940 -11.89524 -11.81381 -11.38784 -11.32607 -11.14837 -10.53075 -10.38704 -9.61753 -9.39372 -8.18085 -6.25562 -0.14492 0.64752 1.05039 1.41928 1.43858 1.50433 1.64210 2.10213 2.17079 2.42769 3.05960 3.17871 3.37149 3.69304 4.06184 4.23624 4.29330 4.36894 4.41081 4.44435 4.73998 4.76080 4.84517 4.96947 4.98543 5.07092 5.09411 5.30223 5.49739 5.65528 5.73035 5.81162 5.95643 6.23196 6.41688 6.85632 6.96390 7.42929 8.92418 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036967 B = 0.003795 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.253864 B = 7377.118209 C = 7721.566218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.158 3.842 3 H 0.110 0.890 4 N -0.701 5.701 5 C 0.081 3.919 6 C 0.019 3.981 7 H 0.121 0.879 8 C 0.265 3.735 9 N -0.519 5.519 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.922 5.922 15 Si 0.944 3.056 16 H -0.283 1.283 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.141 4.141 20 C -0.217 4.217 21 C 0.091 3.909 22 N -0.508 5.508 23 S 0.237 5.763 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.352 0.648 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.001 0.999 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.181 0.819 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -0.495 -18.561 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.046 3.954 3 H 0.128 0.872 4 N -0.333 5.333 5 C -0.048 4.048 6 C -0.003 4.003 7 H 0.138 0.862 8 C -0.051 4.051 9 N -0.196 5.196 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.770 3.230 16 H -0.209 1.209 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.272 4.272 20 C -0.251 4.251 21 C -0.106 4.106 22 N -0.329 5.329 23 S 0.389 5.611 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.171 0.829 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.199 0.801 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.181 -3.005 -18.706 19.929 hybrid contribution -0.538 1.635 1.021 2.001 sum -6.719 -1.369 -17.685 18.968 Atomic orbital electron populations 1.22472 0.93400 1.03264 1.04094 1.19950 0.94160 0.97001 0.84260 0.87211 1.60476 1.58449 1.10468 1.03944 1.21917 1.01557 0.94336 0.87008 1.19225 0.83336 1.01018 0.96725 0.86169 1.29434 0.95187 0.91047 0.89478 1.80973 1.14202 1.11714 1.12724 1.18983 0.97905 0.93509 0.89623 1.21548 1.45930 0.96869 0.93474 0.92914 1.25661 0.95329 0.95696 1.01868 1.70010 1.49539 1.11092 1.25565 0.85812 0.78683 0.79059 0.79400 1.20910 1.20781 1.18750 1.25756 1.01871 0.99538 1.00047 1.21595 1.06371 1.04354 0.92816 1.23359 0.96973 0.87680 1.02554 1.76790 1.23945 1.23074 1.09084 1.84156 1.58985 1.05940 1.12046 0.91952 0.90278 0.90567 0.82853 0.90252 0.90676 0.98052 0.94188 0.92737 0.80148 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.14 71.98 0.66 -1.55 16 2 C 0.16 2.67 3.08 44.17 0.14 2.80 16 3 H 0.11 1.70 7.80 -2.39 -0.02 1.68 16 4 N -0.70 -15.00 5.77 -495.45 -2.86 -17.86 16 5 C 0.08 1.96 4.85 86.30 0.42 2.38 16 6 C 0.02 0.62 2.35 -12.60 -0.03 0.59 16 7 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 8 C 0.26 10.65 13.67 89.45 1.22 11.88 16 9 N -0.52 -23.44 18.53 20.00 0.37 -23.07 16 10 C 0.04 1.69 4.42 29.85 0.13 1.82 16 11 C -0.54 -27.90 8.60 25.60 0.22 -27.68 16 12 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 13 C 0.01 0.73 5.46 84.66 0.46 1.19 16 14 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 15 Si 0.94 42.87 29.54 68.60 2.03 44.89 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C -0.14 -2.73 5.52 24.97 0.14 -2.59 16 20 C -0.22 -3.60 10.17 21.45 0.22 -3.38 16 21 C 0.09 1.65 11.27 84.85 0.96 2.61 16 22 N -0.51 -12.45 12.09 -62.59 -0.76 -13.21 16 23 S 0.24 5.47 23.53 -56.49 -1.33 4.14 16 24 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 25 H 0.08 0.93 7.45 -2.39 -0.02 0.91 16 26 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.35 6.77 8.47 -89.70 -0.76 6.01 16 28 H 0.08 1.56 7.44 -2.39 -0.02 1.54 16 29 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -66.95 314.54 2.62 -64.33 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.35 Total: 4.30 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.53 Total: -11.93 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -2.96 Total: -105.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.33 Total: 4.14 kcal Total: -66.95 2.62 -64.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860051428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.846 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds