Wall clock time and date at job start Mon Mar 30 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.50694 * 109.47231 * 66.04485 * 3 2 1 5 5 H 1.07998 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99807 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99794 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00159 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47251 * 90.00065 * 8 6 4 10 10 H 1.48500 * 109.46629 * 210.00343 * 8 6 4 11 11 H 1.48501 * 109.46903 * 329.99903 * 8 6 4 12 12 C 1.46896 * 110.99857 * 236.04341 * 2 1 3 13 13 C 1.53002 * 109.47243 * 293.95220 * 12 2 1 14 14 C 1.50706 * 109.46925 * 180.02562 * 13 12 2 15 15 O 1.21270 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.47018 * 119.99557 * 180.02562 * 14 13 12 17 17 C 1.39941 * 120.14672 * 359.72161 * 16 14 13 18 18 C 1.37743 * 119.84969 * 179.74134 * 17 16 14 19 19 C 1.38720 * 120.14928 * 0.53695 * 18 17 16 20 20 F 1.35091 * 119.85527 * 179.69737 * 19 18 17 21 21 C 1.38721 * 120.28735 * 359.72050 * 19 18 17 22 22 C 1.37744 * 120.15094 * 0.02562 * 21 19 18 23 23 H 1.09006 * 109.47464 * 183.95519 * 1 2 3 24 24 H 1.08998 * 109.47309 * 303.95832 * 1 2 3 25 25 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 26 26 H 1.08996 * 109.47398 * 186.05057 * 3 2 1 27 27 H 1.09009 * 109.46750 * 306.04800 * 3 2 1 28 28 H 0.96993 * 119.99887 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47041 * 173.95430 * 12 2 1 30 30 H 1.09004 * 109.47535 * 53.95470 * 12 2 1 31 31 H 1.09000 * 109.46497 * 60.00307 * 13 12 2 32 32 H 1.09000 * 109.47312 * 300.00087 * 13 12 2 33 33 H 1.08001 * 120.07294 * 0.02562 * 17 16 14 34 34 H 1.07999 * 119.92494 * 180.26025 * 18 17 16 35 35 H 1.08007 * 119.92324 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.07613 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3495 1.5283 7 7 1.7135 3.9394 2.6613 8 14 3.0001 4.2761 0.2308 9 1 2.0636 4.9797 -0.6818 10 1 3.8864 5.2677 0.8913 11 1 3.8240 3.3173 -0.5484 12 6 1.9953 -0.7660 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 6 2.1720 -3.0286 -2.1370 15 8 2.7881 -2.4635 -3.0154 16 6 1.9524 -4.4804 -2.2101 17 6 1.2469 -5.1366 -1.1951 18 6 1.0402 -6.4962 -1.2725 19 6 1.5391 -7.2167 -2.3478 20 9 1.3381 -8.5509 -2.4146 21 6 2.2439 -6.5732 -3.3546 22 6 2.4532 -5.2132 -3.2920 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0796 1.3444 -0.1083 27 1 1.5610 1.9273 -0.8310 28 1 1.9881 4.8555 2.8232 29 1 3.0796 -0.6611 -1.1756 30 1 1.5610 -0.3873 -2.0628 31 1 0.5471 -2.3475 -0.9322 32 1 2.0657 -2.6214 -0.0450 33 1 0.8615 -4.5774 -0.3554 34 1 0.4922 -7.0031 -0.4920 35 1 2.6301 -7.1400 -4.1889 36 1 3.0025 -4.7135 -4.0763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:43 Heat of formation + Delta-G solvation = -52.765882 kcal Electronic energy + Delta-G solvation = -18849.687475 eV Core-core repulsion = 15634.546868 eV Total energy + Delta-G solvation = -3215.140607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.35827 -40.24941 -38.34401 -36.74439 -32.80273 -32.03521 -31.39242 -30.39633 -27.68390 -26.00562 -24.13457 -23.37749 -22.04342 -20.19553 -19.68322 -18.18565 -17.00876 -16.77937 -16.60970 -16.05132 -15.56845 -15.27957 -14.84748 -14.36378 -14.16417 -14.04354 -13.87155 -13.29333 -13.25125 -12.97714 -12.86380 -12.40742 -12.23883 -11.66983 -11.48350 -11.34474 -11.05882 -10.78093 -10.61944 -10.19332 -9.91109 -9.70295 -9.59673 -9.28583 -9.14231 -8.57791 -7.43405 -6.05676 -4.03012 0.20348 0.81362 2.11708 3.29259 3.30180 3.36930 3.40324 3.72548 3.79872 4.26538 4.42593 4.42758 4.74747 4.79909 4.90600 5.02930 5.22265 5.26668 5.37779 5.46458 5.54532 5.63905 5.72340 5.80829 5.95507 6.00600 6.09038 6.28206 6.30008 6.37451 6.66545 6.85855 6.98507 7.40306 7.59179 7.86390 8.02446 8.64496 9.02178 9.56276 11.07370 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045649 B = 0.003224 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.224536 B = 8682.708605 C = 9118.730865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.533 5.533 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.061 3.939 13 C -0.162 4.162 14 C 0.398 3.602 15 O -0.450 6.450 16 C -0.176 4.176 17 C -0.041 4.041 18 C -0.166 4.166 19 C 0.125 3.875 20 F -0.136 7.136 21 C -0.168 4.168 22 C -0.035 4.035 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.012 0.988 26 H 0.029 0.971 27 H -0.015 1.015 28 H 0.264 0.736 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -21.737 -10.492 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.256 5.256 3 C 0.035 3.965 4 C -0.548 4.548 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.067 4.067 13 C -0.200 4.200 14 C 0.275 3.725 15 O -0.325 6.325 16 C -0.177 4.177 17 C -0.059 4.059 18 C -0.185 4.185 19 C 0.105 3.895 20 F -0.114 7.114 21 C -0.187 4.187 22 C -0.053 4.053 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.002 0.998 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.905 -21.525 -10.421 23.932 hybrid contribution 0.145 0.624 -1.313 1.461 sum -0.761 -20.901 -11.734 23.982 Atomic orbital electron populations 1.22317 0.88447 0.99853 1.01023 1.61954 1.07341 1.16653 1.39680 1.20197 0.95317 0.83902 0.97058 1.21032 1.35627 0.97203 1.00906 0.90074 1.24897 0.95740 0.97365 0.95330 1.69890 1.46902 1.13264 1.23931 0.86868 0.80694 0.80091 0.82167 1.20342 1.21119 1.19103 1.21865 1.00778 0.91275 0.92823 1.22066 1.02988 0.96857 0.98064 1.22551 0.76284 0.87354 0.86342 1.90532 1.31615 1.72171 1.38137 1.20735 1.03607 0.96125 0.97255 1.21437 0.93725 0.93419 0.97330 1.21165 1.03656 0.94898 0.98790 1.18066 0.97996 0.77414 0.96002 1.91522 1.93000 1.30637 1.96282 1.21136 1.02324 0.95425 0.99797 1.21322 0.94714 0.92579 0.96706 0.93301 0.90030 0.96977 0.95291 0.99765 0.92651 0.90786 0.95230 0.88246 0.87261 0.83466 0.83938 0.84156 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.14 60.06 0.55 1.13 16 2 N -0.53 -10.92 4.75 -244.38 -1.16 -12.08 16 3 C 0.16 3.95 3.79 -4.98 -0.02 3.93 16 4 C -0.51 -14.43 9.01 -34.44 -0.31 -14.74 16 5 H 0.08 2.47 7.37 -52.49 -0.39 2.09 16 6 C 0.07 1.98 5.47 -17.81 -0.10 1.88 16 7 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 8 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.06 1.05 4.25 -3.83 -0.02 1.03 16 13 C -0.16 -2.03 4.23 -27.88 -0.12 -2.15 16 14 C 0.40 4.93 7.11 -30.75 -0.22 4.71 16 15 O -0.45 -6.97 15.97 5.57 0.09 -6.88 16 16 C -0.18 -1.76 5.87 -105.06 -0.62 -2.38 16 17 C -0.04 -0.33 9.47 -39.13 -0.37 -0.70 16 18 C -0.17 -1.27 10.01 -39.58 -0.40 -1.67 16 19 C 0.12 1.07 7.31 -39.22 -0.29 0.78 16 20 F -0.14 -1.24 17.26 2.25 0.04 -1.20 16 21 C -0.17 -1.37 10.01 -39.58 -0.40 -1.76 16 22 C -0.04 -0.33 9.59 -39.12 -0.38 -0.70 16 23 H 0.05 0.71 6.47 -51.93 -0.34 0.37 16 24 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.03 0.72 6.99 -51.93 -0.36 0.36 16 27 H -0.02 -0.38 7.55 -51.92 -0.39 -0.77 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.33 7.89 -51.93 -0.41 0.92 16 30 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.10 1.07 6.50 -51.93 -0.34 0.73 16 32 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 33 H 0.15 0.91 7.05 -52.49 -0.37 0.54 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.14 1.28 7.65 -52.49 -0.40 0.88 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -32.12 308.36 -7.58 -39.70 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.62 Total: -3.79 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.67 Total: -10.62 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.39 Total: -38.85 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: 0.09 Total: -6.88 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.12 -7.58 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.070 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds