Wall clock time and date at job start Mon Mar 30 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.50694 * 109.47231 * 66.04485 * 3 2 1 5 5 H 1.07998 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99807 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99794 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00159 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47251 * 90.00065 * 8 6 4 10 10 H 1.48500 * 109.46629 * 210.00343 * 8 6 4 11 11 H 1.48501 * 109.46903 * 329.99903 * 8 6 4 12 12 C 1.46896 * 110.99857 * 236.04341 * 2 1 3 13 13 C 1.53002 * 109.47243 * 293.95220 * 12 2 1 14 14 C 1.50706 * 109.46925 * 180.02562 * 13 12 2 15 15 O 1.21270 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.47018 * 119.99557 * 180.02562 * 14 13 12 17 17 C 1.39941 * 120.14672 * 359.72161 * 16 14 13 18 18 C 1.37743 * 119.84969 * 179.74134 * 17 16 14 19 19 C 1.38720 * 120.14928 * 0.53695 * 18 17 16 20 20 F 1.35091 * 119.85527 * 179.69737 * 19 18 17 21 21 C 1.38721 * 120.28735 * 359.72050 * 19 18 17 22 22 C 1.37744 * 120.15094 * 0.02562 * 21 19 18 23 23 H 1.09006 * 109.47464 * 183.95519 * 1 2 3 24 24 H 1.08998 * 109.47309 * 303.95832 * 1 2 3 25 25 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 26 26 H 1.08996 * 109.47398 * 186.05057 * 3 2 1 27 27 H 1.09009 * 109.46750 * 306.04800 * 3 2 1 28 28 H 0.96993 * 119.99887 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47041 * 173.95430 * 12 2 1 30 30 H 1.09004 * 109.47535 * 53.95470 * 12 2 1 31 31 H 1.09000 * 109.46497 * 60.00307 * 13 12 2 32 32 H 1.09000 * 109.47312 * 300.00087 * 13 12 2 33 33 H 1.08001 * 120.07294 * 0.02562 * 17 16 14 34 34 H 1.07999 * 119.92494 * 180.26025 * 18 17 16 35 35 H 1.08007 * 119.92324 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.07613 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3495 1.5283 7 7 1.7135 3.9394 2.6613 8 14 3.0001 4.2761 0.2308 9 1 2.0636 4.9797 -0.6818 10 1 3.8864 5.2677 0.8913 11 1 3.8240 3.3173 -0.5484 12 6 1.9953 -0.7660 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 6 2.1720 -3.0286 -2.1370 15 8 2.7881 -2.4635 -3.0154 16 6 1.9524 -4.4804 -2.2101 17 6 1.2469 -5.1366 -1.1951 18 6 1.0402 -6.4962 -1.2725 19 6 1.5391 -7.2167 -2.3478 20 9 1.3381 -8.5509 -2.4146 21 6 2.2439 -6.5732 -3.3546 22 6 2.4532 -5.2132 -3.2920 23 1 -0.3634 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0796 1.3444 -0.1083 27 1 1.5610 1.9273 -0.8310 28 1 1.9881 4.8555 2.8232 29 1 3.0796 -0.6611 -1.1756 30 1 1.5610 -0.3873 -2.0628 31 1 0.5471 -2.3475 -0.9322 32 1 2.0657 -2.6214 -0.0450 33 1 0.8615 -4.5774 -0.3554 34 1 0.4922 -7.0031 -0.4920 35 1 2.6301 -7.1400 -4.1889 36 1 3.0025 -4.7135 -4.0763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:43 Heat of formation + Delta-G solvation = -73.295959 kcal Electronic energy + Delta-G solvation = -18850.577726 eV Core-core repulsion = 15634.546868 eV Total energy + Delta-G solvation = -3216.030858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.02692 -41.13471 -39.19369 -38.27596 -34.79354 -33.13736 -32.09213 -31.51887 -29.50393 -27.40296 -25.29680 -24.11969 -23.34939 -21.76431 -20.67713 -19.01566 -18.81202 -17.79688 -17.43133 -16.85375 -16.66191 -16.57041 -16.20143 -15.64332 -15.49109 -15.18308 -14.77310 -14.58663 -14.34916 -14.12982 -14.02147 -13.81047 -13.29093 -13.17218 -12.96277 -12.69754 -12.56152 -12.18208 -12.03729 -11.83034 -11.69579 -11.45015 -10.80009 -10.76380 -10.20363 -9.83599 -9.07930 -8.28849 -6.31501 -0.53330 0.20685 1.27957 1.33422 1.35470 1.46198 2.33711 2.61168 2.76822 3.04427 3.13123 3.44710 3.66083 3.85050 3.93141 4.09894 4.18263 4.20071 4.41459 4.49522 4.65307 4.69300 4.83441 4.87100 4.90009 4.94587 5.00340 5.03337 5.06091 5.12938 5.27083 5.29278 5.53035 5.75030 5.96347 6.34846 6.47753 6.62784 6.74777 7.32154 8.87415 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045649 B = 0.003224 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.224536 B = 8682.708605 C = 9118.730865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.543 5.543 3 C 0.168 3.832 4 C -0.514 4.514 5 H 0.046 0.954 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.941 3.059 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.254 1.254 12 C 0.063 3.937 13 C -0.154 4.154 14 C 0.406 3.594 15 O -0.490 6.490 16 C -0.191 4.191 17 C -0.033 4.033 18 C -0.164 4.164 19 C 0.118 3.882 20 F -0.140 7.140 21 C -0.168 4.168 22 C -0.043 4.043 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.015 0.985 26 H 0.025 0.975 27 H -0.017 1.017 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -23.400 -11.439 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.267 5.267 3 C 0.041 3.959 4 C -0.552 4.552 5 H 0.064 0.936 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.178 1.178 12 C -0.066 4.066 13 C -0.191 4.191 14 C 0.286 3.714 15 O -0.368 6.368 16 C -0.192 4.192 17 C -0.051 4.051 18 C -0.182 4.182 19 C 0.098 3.902 20 F -0.118 7.118 21 C -0.186 4.186 22 C -0.061 4.061 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.000 1.000 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.188 0.812 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.100 -23.222 -11.370 25.879 hybrid contribution 0.137 1.020 -0.966 1.412 sum -0.963 -22.201 -12.336 25.417 Atomic orbital electron populations 1.22333 0.87068 1.02245 0.99774 1.61874 1.08685 1.14492 1.41625 1.19966 0.95117 0.86112 0.94700 1.21251 1.34805 0.97425 1.01724 0.93613 1.25777 0.96938 0.98459 0.97531 1.70029 1.48552 1.13905 1.26151 0.85798 0.79398 0.78831 0.79437 1.19368 1.20454 1.17831 1.21871 0.99772 0.93746 0.91183 1.22029 1.04693 0.93474 0.98931 1.22685 0.74989 0.88372 0.85364 1.90530 1.33681 1.73081 1.39529 1.20588 1.05334 0.94696 0.98592 1.21655 0.92687 0.93657 0.97140 1.21432 1.03129 0.94746 0.98893 1.18286 0.98076 0.77339 0.96454 1.91517 1.93022 1.30968 1.96326 1.21283 1.02004 0.95028 1.00322 1.21375 0.94931 0.93092 0.96701 0.88797 0.93072 0.96655 0.95697 0.99956 0.92385 0.92205 0.95845 0.85712 0.85654 0.81232 0.81665 0.82507 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 9.14 127.69 1.17 2.36 16 2 N -0.54 -21.78 4.75 -927.07 -4.41 -26.18 16 3 C 0.17 8.21 3.79 85.56 0.32 8.54 16 4 C -0.51 -29.66 9.01 25.60 0.23 -29.43 16 5 H 0.05 2.89 7.37 -2.91 -0.02 2.87 16 6 C 0.01 0.61 5.47 84.66 0.46 1.08 16 7 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 8 Si 0.94 44.71 27.47 68.60 1.88 46.59 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 12 C 0.06 2.06 4.25 86.30 0.37 2.43 16 13 C -0.15 -3.45 4.23 29.85 0.13 -3.32 16 14 C 0.41 9.39 7.11 27.99 0.20 9.59 16 15 O -0.49 -14.96 15.97 -3.00 -0.05 -15.01 16 16 C -0.19 -3.42 5.87 -20.15 -0.12 -3.54 16 17 C -0.03 -0.43 9.47 22.57 0.21 -0.21 16 18 C -0.16 -1.97 10.01 22.27 0.22 -1.75 16 19 C 0.12 1.73 7.31 22.50 0.16 1.89 16 20 F -0.14 -2.25 17.26 44.97 0.78 -1.47 16 21 C -0.17 -2.41 10.01 22.27 0.22 -2.19 16 22 C -0.04 -0.73 9.59 22.57 0.22 -0.52 16 23 H 0.09 2.42 6.47 -2.38 -0.02 2.41 16 24 H 0.05 2.11 6.76 -2.39 -0.02 2.09 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.02 1.23 6.99 -2.39 -0.02 1.22 16 27 H -0.02 -0.84 7.55 -2.38 -0.02 -0.86 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.06 2.12 7.89 -2.38 -0.02 2.10 16 30 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.13 2.17 6.50 -2.39 -0.02 2.15 16 32 H 0.13 2.46 8.08 -2.39 -0.02 2.44 16 33 H 0.17 1.35 7.05 -2.91 -0.02 1.33 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.14 2.43 7.65 -2.91 -0.02 2.41 16 Total: -1.00 -70.77 308.36 3.33 -67.44 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.02 Total: 2.39 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 3.80 Total: -15.07 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -4.11 Total: -84.86 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.05 Total: -15.01 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -70.77 3.33 -67.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.857 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds