Wall clock time and date at job start Mon Mar 30 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38226 * 120.01093 * 2 1 4 4 C 1.38220 * 120.02357 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.05552 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.98881 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47125 * 339.99478 * 6 5 4 8 8 C 1.53001 * 109.47522 * 99.99886 * 6 5 4 9 9 N 1.46906 * 109.46885 * 219.99639 * 6 5 4 10 10 C 1.46902 * 110.99573 * 155.00031 * 9 6 5 11 11 H 1.08995 * 109.47359 * 35.00383 * 10 9 6 12 12 C 1.52999 * 109.47083 * 274.99770 * 10 9 6 13 13 C 1.53000 * 109.46858 * 155.00031 * 10 9 6 14 14 C 1.50707 * 109.47303 * 294.99890 * 13 10 9 15 15 H 1.07998 * 119.99577 * 359.97438 * 14 13 10 16 16 C 1.37873 * 120.00284 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99890 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00032 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47540 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47325 * 120.00335 * 18 16 14 21 21 H 1.48505 * 109.47375 * 239.99813 * 18 16 14 22 22 C 1.38180 * 120.02314 * 0.26798 * 5 4 3 23 23 C 1.38441 * 120.01629 * 180.02562 * 2 1 3 24 24 F 1.35098 * 120.02154 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47112 * 90.00131 * 1 2 3 26 26 H 1.09000 * 109.46994 * 209.99990 * 1 2 3 27 27 H 1.08995 * 109.47095 * 330.00000 * 1 2 3 28 28 H 1.07997 * 119.98870 * 0.02562 * 3 2 1 29 29 H 1.08006 * 119.97816 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47627 * 180.02562 * 8 6 5 31 31 H 1.09002 * 109.46966 * 300.00410 * 8 6 5 32 32 H 1.09008 * 109.46883 * 59.99227 * 8 6 5 33 33 H 1.00896 * 111.00309 * 31.04442 * 9 6 5 34 34 H 1.09000 * 109.47023 * 60.00485 * 12 10 9 35 35 H 1.09004 * 109.46766 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.46954 * 300.00265 * 12 10 9 37 37 H 1.08997 * 109.47474 * 54.99659 * 13 10 9 38 38 H 1.08999 * 109.47164 * 174.99854 * 13 10 9 39 39 H 0.96998 * 119.99881 * 180.02562 * 17 16 14 40 40 H 1.07990 * 120.01271 * 179.72895 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7802 0.0027 -0.0028 7 1 6.1420 0.9690 -0.3542 8 6 6.2918 -0.2477 1.4173 9 7 6.2706 -1.0573 -0.8939 10 6 7.6172 -0.7455 -1.3915 11 1 8.1810 -0.2289 -0.6148 12 6 7.5095 0.1519 -2.6260 13 6 8.3358 -2.0434 -1.7655 14 6 8.5511 -2.8735 -0.5263 15 1 8.2098 -2.5114 0.4322 16 6 9.1837 -4.0953 -0.6162 17 7 9.5997 -4.5361 -1.7834 18 14 9.4511 -5.1239 0.9199 19 1 8.8954 -4.4093 2.0972 20 1 8.7645 -6.4315 0.7658 21 1 10.9055 -5.3490 1.1180 22 6 3.5843 -1.1971 -0.0077 23 6 2.1995 -1.1987 -0.0005 24 9 1.5248 -2.3692 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6583 2.1322 0.0004 29 1 4.1200 2.1329 -0.0001 30 1 7.3817 -0.2457 1.4165 31 1 5.9278 0.5388 2.0785 32 1 5.9299 -1.2140 1.7687 33 1 5.6299 -1.2129 -1.6576 34 1 6.9975 1.0765 -2.3595 35 1 8.5087 0.3829 -2.9955 36 1 6.9457 -0.3648 -3.4027 37 1 7.7284 -2.6031 -2.4767 38 1 9.2996 -1.8079 -2.2170 39 1 10.0444 -5.3958 -1.8467 40 1 4.1255 -2.1316 -0.0130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411470859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:20 Heat of formation + Delta-G solvation = -40.976075 kcal Electronic energy + Delta-G solvation = -20034.782887 eV Core-core repulsion = 16955.986619 eV Total energy + Delta-G solvation = -3078.796268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.80821 -39.53402 -37.02924 -34.00392 -32.35863 -31.00727 -30.54985 -27.95243 -27.16435 -26.72703 -23.21545 -22.97186 -22.11433 -20.30396 -19.58928 -17.05921 -16.57113 -16.14136 -15.71082 -15.62449 -14.91876 -14.52618 -14.12522 -13.84038 -13.75642 -13.50410 -13.15115 -12.79423 -12.64853 -12.51003 -12.22456 -11.79281 -11.74509 -11.66501 -11.45020 -11.38674 -11.16849 -10.95763 -10.64477 -10.50267 -10.32874 -9.99109 -9.26947 -8.94257 -8.82744 -8.49958 -8.22695 -7.60760 -5.84947 -3.82208 1.13792 1.24369 3.40191 3.47853 3.52428 3.56001 4.26248 4.58768 4.59578 4.62133 4.81504 4.92431 5.11419 5.31828 5.40670 5.46665 5.52336 5.58319 5.68775 5.70959 5.80358 5.88361 5.94412 6.00789 6.05490 6.12392 6.14085 6.29970 6.34910 6.43372 6.59445 6.64292 6.70130 6.94574 7.05373 7.57771 7.71508 8.03164 8.07721 8.18994 8.63243 9.23588 9.79132 11.27329 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.004935 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.486840 B = 5671.986045 C = 6287.139595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 C -0.097 4.097 4 C -0.124 4.124 5 C -0.056 4.056 6 C 0.123 3.877 7 H 0.046 0.954 8 C -0.133 4.133 9 N -0.657 5.657 10 C 0.089 3.911 11 H 0.066 0.934 12 C -0.180 4.180 13 C 0.033 3.967 14 C -0.486 4.486 15 H 0.060 0.940 16 C 0.049 3.951 17 N -0.904 5.904 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.288 1.288 22 C -0.127 4.127 23 C 0.094 3.906 24 F -0.140 7.140 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.333 0.667 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.256 0.744 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 12.885 3.064 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.143 4.143 5 C -0.057 4.057 6 C 0.013 3.987 7 H 0.064 0.936 8 C -0.191 4.191 9 N -0.288 5.288 10 C -0.020 4.020 11 H 0.084 0.916 12 C -0.239 4.239 13 C -0.004 4.004 14 C -0.524 4.524 15 H 0.078 0.922 16 C -0.150 4.150 17 N -0.546 5.546 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.146 4.146 23 C 0.074 3.926 24 F -0.119 7.119 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.715 12.292 3.514 19.493 hybrid contribution -0.104 -0.205 0.081 0.243 sum -14.819 12.087 3.595 19.458 Atomic orbital electron populations 1.20689 0.90542 1.03017 1.02556 1.19893 0.96757 0.92123 1.04264 1.20803 0.93944 0.96749 1.00037 1.21086 0.93984 0.97835 1.01404 1.19967 0.96146 0.92129 0.97438 1.20476 0.87990 0.94386 0.95880 0.93572 1.21782 1.01815 1.01493 0.94007 1.60723 1.03761 1.41800 1.22538 1.21843 0.89016 0.97775 0.93408 0.91570 1.22563 1.01646 0.99329 1.00382 1.19109 0.94175 0.90092 0.97039 1.21199 1.34766 1.02221 0.94240 0.92152 1.25003 0.96432 0.97990 0.95554 1.69976 1.41219 1.20123 1.23249 0.86607 0.77406 0.80416 0.83951 1.19844 1.21357 1.21476 1.21213 0.91629 1.00670 1.01112 1.17593 0.90154 0.80801 1.04013 1.91473 1.80308 1.46130 1.93942 0.91063 0.91357 0.91247 0.85433 0.85670 0.91665 0.93526 0.91752 0.84857 0.94456 0.92450 0.93056 0.96539 0.96503 0.93450 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.84 36.00 0.35 -0.65 16 2 C -0.13 -1.50 5.89 -104.55 -0.62 -2.12 16 3 C -0.10 -1.02 9.70 -39.59 -0.38 -1.40 16 4 C -0.12 -1.42 9.67 -39.58 -0.38 -1.80 16 5 C -0.06 -0.76 4.72 -104.63 -0.49 -1.26 16 6 C 0.12 1.83 2.63 -68.86 -0.18 1.65 16 7 H 0.05 0.65 6.97 -51.93 -0.36 0.29 16 8 C -0.13 -2.03 9.38 37.16 0.35 -1.68 16 9 N -0.66 -11.82 5.15 -100.95 -0.52 -12.34 16 10 C 0.09 1.74 2.34 -67.71 -0.16 1.58 16 11 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 12 C -0.18 -2.98 9.15 37.16 0.34 -2.64 16 13 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 14 C -0.49 -13.51 8.84 -34.44 -0.30 -13.82 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.13 -1.86 8.98 -39.51 -0.35 -2.22 16 23 C 0.09 1.30 7.24 -39.42 -0.29 1.01 16 24 F -0.14 -2.05 16.48 2.25 0.04 -2.01 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.63 7.64 -51.93 -0.40 0.23 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.19 8.04 -52.48 -0.42 0.77 16 30 H 0.06 1.08 7.43 -51.93 -0.39 0.69 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 33 H 0.33 5.80 7.72 -39.29 -0.30 5.50 16 34 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.15 2.41 7.71 -52.49 -0.40 2.01 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -30.11 333.47 -8.46 -38.57 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.37 Total: 1.67 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.34 Total: -21.32 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.22 Total: -39.10 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.11 -8.46 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411470859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.406 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds