Wall clock time and date at job start Mon Mar 30 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38226 * 120.01093 * 2 1 4 4 C 1.38220 * 120.02357 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.05552 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.98881 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47125 * 339.99478 * 6 5 4 8 8 C 1.53001 * 109.47522 * 99.99886 * 6 5 4 9 9 N 1.46906 * 109.46885 * 219.99639 * 6 5 4 10 10 C 1.46902 * 110.99573 * 155.00031 * 9 6 5 11 11 H 1.08995 * 109.47359 * 35.00383 * 10 9 6 12 12 C 1.52999 * 109.47083 * 274.99770 * 10 9 6 13 13 C 1.53000 * 109.46858 * 155.00031 * 10 9 6 14 14 C 1.50707 * 109.47303 * 294.99890 * 13 10 9 15 15 H 1.07998 * 119.99577 * 359.97438 * 14 13 10 16 16 C 1.37873 * 120.00284 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99890 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00032 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47540 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47325 * 120.00335 * 18 16 14 21 21 H 1.48505 * 109.47375 * 239.99813 * 18 16 14 22 22 C 1.38180 * 120.02314 * 0.26798 * 5 4 3 23 23 C 1.38441 * 120.01629 * 180.02562 * 2 1 3 24 24 F 1.35098 * 120.02154 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47112 * 90.00131 * 1 2 3 26 26 H 1.09000 * 109.46994 * 209.99990 * 1 2 3 27 27 H 1.08995 * 109.47095 * 330.00000 * 1 2 3 28 28 H 1.07997 * 119.98870 * 0.02562 * 3 2 1 29 29 H 1.08006 * 119.97816 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47627 * 180.02562 * 8 6 5 31 31 H 1.09002 * 109.46966 * 300.00410 * 8 6 5 32 32 H 1.09008 * 109.46883 * 59.99227 * 8 6 5 33 33 H 1.00896 * 111.00309 * 31.04442 * 9 6 5 34 34 H 1.09000 * 109.47023 * 60.00485 * 12 10 9 35 35 H 1.09004 * 109.46766 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.46954 * 300.00265 * 12 10 9 37 37 H 1.08997 * 109.47474 * 54.99659 * 13 10 9 38 38 H 1.08999 * 109.47164 * 174.99854 * 13 10 9 39 39 H 0.96998 * 119.99881 * 180.02562 * 17 16 14 40 40 H 1.07990 * 120.01271 * 179.72895 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7802 0.0027 -0.0028 7 1 6.1420 0.9690 -0.3542 8 6 6.2918 -0.2477 1.4173 9 7 6.2706 -1.0573 -0.8939 10 6 7.6172 -0.7455 -1.3915 11 1 8.1810 -0.2289 -0.6148 12 6 7.5095 0.1519 -2.6260 13 6 8.3358 -2.0434 -1.7655 14 6 8.5511 -2.8735 -0.5263 15 1 8.2098 -2.5114 0.4322 16 6 9.1837 -4.0953 -0.6162 17 7 9.5997 -4.5361 -1.7834 18 14 9.4511 -5.1239 0.9199 19 1 8.8954 -4.4093 2.0972 20 1 8.7645 -6.4315 0.7658 21 1 10.9055 -5.3490 1.1180 22 6 3.5843 -1.1971 -0.0077 23 6 2.1995 -1.1987 -0.0005 24 9 1.5248 -2.3692 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6583 2.1322 0.0004 29 1 4.1200 2.1329 -0.0001 30 1 7.3817 -0.2457 1.4165 31 1 5.9278 0.5388 2.0785 32 1 5.9299 -1.2140 1.7687 33 1 5.6299 -1.2129 -1.6576 34 1 6.9975 1.0765 -2.3595 35 1 8.5087 0.3829 -2.9955 36 1 6.9457 -0.3648 -3.4027 37 1 7.7284 -2.6031 -2.4767 38 1 9.2996 -1.8079 -2.2170 39 1 10.0444 -5.3958 -1.8467 40 1 4.1255 -2.1316 -0.0130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411470859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:20 Heat of formation + Delta-G solvation = -57.537331 kcal Electronic energy + Delta-G solvation = -20035.501037 eV Core-core repulsion = 16955.986619 eV Total energy + Delta-G solvation = -3079.514418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.88328 -40.55455 -38.37825 -35.48069 -34.18859 -32.20082 -31.50066 -29.64561 -28.76732 -27.64488 -25.10048 -24.01839 -23.23985 -21.46351 -21.12346 -18.45183 -18.06194 -17.60234 -16.72902 -16.68208 -16.47467 -16.14633 -15.58914 -15.13807 -14.71946 -14.43959 -14.30879 -14.20369 -13.98534 -13.65874 -13.52531 -13.27188 -13.20905 -12.97125 -12.76958 -12.67205 -12.44790 -12.38598 -12.29953 -12.19775 -11.87474 -11.54809 -11.11707 -11.05914 -10.47881 -9.79886 -9.45853 -9.01457 -8.08460 -6.12211 0.18553 0.29015 1.39692 1.41442 1.53548 2.47637 2.61199 3.22900 3.27955 3.39183 3.68484 3.86862 3.97586 4.22535 4.28270 4.32910 4.44053 4.52345 4.54831 4.62528 4.71001 4.77229 4.83923 4.84804 5.00091 5.03764 5.12747 5.21838 5.23965 5.26899 5.30579 5.41841 5.43063 5.54616 5.56849 5.73774 5.92519 5.99654 6.36512 6.52743 6.71292 7.02719 7.53288 9.04127 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.004935 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.486840 B = 5671.986045 C = 6287.139595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.126 4.126 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.066 4.066 6 C 0.128 3.872 7 H 0.066 0.934 8 C -0.130 4.130 9 N -0.676 5.676 10 C 0.100 3.900 11 H 0.065 0.935 12 C -0.170 4.170 13 C 0.037 3.963 14 C -0.492 4.492 15 H 0.060 0.940 16 C -0.008 4.008 17 N -0.942 5.942 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.281 1.281 22 C -0.145 4.145 23 C 0.068 3.932 24 F -0.153 7.153 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.334 0.666 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.048 0.952 37 H -0.013 1.013 38 H -0.008 1.008 39 H 0.257 0.743 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 15.622 4.087 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.134 4.134 5 C -0.067 4.067 6 C 0.019 3.981 7 H 0.084 0.916 8 C -0.188 4.188 9 N -0.307 5.307 10 C -0.009 4.009 11 H 0.083 0.917 12 C -0.229 4.229 13 C 0.000 4.000 14 C -0.530 4.530 15 H 0.078 0.922 16 C -0.203 4.203 17 N -0.585 5.585 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.207 1.207 22 C -0.164 4.164 23 C 0.049 3.951 24 F -0.131 7.131 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.005 0.995 38 H 0.010 0.990 39 H 0.066 0.934 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.342 15.041 4.548 22.671 hybrid contribution 0.346 -1.027 -0.238 1.110 sum -15.996 14.014 4.310 21.698 Atomic orbital electron populations 1.20775 0.88619 1.03972 1.03451 1.20273 0.98260 0.91527 1.02643 1.21239 0.93697 0.97641 0.97992 1.21393 0.94614 0.97742 0.99621 1.19840 0.95166 0.92697 0.99002 1.20453 0.89089 0.93957 0.94612 0.91637 1.21761 1.00636 1.01358 0.95075 1.60529 1.03091 1.44098 1.23005 1.21486 0.89482 0.95126 0.94847 0.91711 1.22420 1.02082 0.99782 0.98587 1.18996 0.93163 0.92548 0.95289 1.21550 1.33879 1.02557 0.95056 0.92198 1.25842 0.96477 0.99478 0.98519 1.70105 1.42356 1.20656 1.25400 0.85572 0.77494 0.78548 0.80444 1.18934 1.21276 1.20732 1.21053 0.92208 1.00202 1.02977 1.17850 0.90054 0.81440 1.05761 1.91432 1.80426 1.47047 1.94244 0.90095 0.92137 0.88606 0.81593 0.82856 0.93361 0.90647 0.94006 0.84733 0.91340 0.92464 0.93322 0.99496 0.99002 0.93425 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.84 71.23 0.70 -0.98 16 2 C -0.13 -2.61 5.89 -19.82 -0.12 -2.73 16 3 C -0.09 -1.46 9.70 22.26 0.22 -1.24 16 4 C -0.12 -2.18 9.67 22.27 0.22 -1.97 16 5 C -0.07 -1.70 4.72 -19.87 -0.09 -1.80 16 6 C 0.13 3.65 2.63 44.17 0.12 3.76 16 7 H 0.07 1.64 6.97 -2.39 -0.02 1.62 16 8 C -0.13 -3.87 9.38 71.98 0.68 -3.20 16 9 N -0.68 -24.50 5.15 -473.31 -2.44 -26.94 16 10 C 0.10 3.94 2.34 44.91 0.11 4.04 16 11 H 0.06 2.56 7.11 -2.39 -0.02 2.54 16 12 C -0.17 -5.40 9.15 71.98 0.66 -4.74 16 13 C 0.04 1.96 4.65 29.85 0.14 2.10 16 14 C -0.49 -28.14 8.84 25.60 0.23 -27.91 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 17 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 18 Si 0.95 46.42 29.54 68.60 2.03 48.45 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 C -0.15 -4.32 8.98 22.31 0.20 -4.12 16 23 C 0.07 1.87 7.24 22.38 0.16 2.03 16 24 F -0.15 -4.60 16.48 44.97 0.74 -3.86 16 25 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.01 7.64 -2.39 -0.02 1.00 16 27 H 0.10 0.94 8.09 -2.39 -0.02 0.92 16 28 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.15 2.06 8.04 -2.91 -0.02 2.04 16 30 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.33 11.86 7.72 -89.70 -0.69 11.17 16 34 H 0.07 1.76 7.43 -2.39 -0.02 1.74 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 40 H 0.12 4.19 7.71 -2.92 -0.02 4.17 16 Total: -1.00 -67.52 333.47 4.60 -62.92 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.32 Total: 14.86 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.67 Total: -36.73 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.15 Total: -85.63 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.74 Total: -3.86 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -67.52 4.60 -62.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411470859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.383 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds