Wall clock time and date at job start Mon Mar 30 2020 07:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00072 * 2 1 4 4 C 1.38564 * 120.07337 * 359.72355 * 3 2 1 5 5 C 1.38238 * 120.00064 * 179.74073 * 4 3 2 6 6 C 1.50704 * 119.92929 * 180.25521 * 5 4 3 7 7 N 1.46897 * 109.47158 * 270.26229 * 6 5 4 8 8 C 1.38250 * 120.14617 * 0.51913 * 5 4 3 9 9 C 1.38248 * 120.14766 * 359.76081 * 8 5 4 10 10 C 1.38564 * 119.99576 * 359.97438 * 9 8 5 11 11 O 1.35995 * 120.07072 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00127 * 5.49062 * 11 10 9 13 13 H 1.09004 * 109.46802 * 35.04360 * 12 11 10 14 14 C 1.52992 * 109.46918 * 275.04481 * 12 11 10 15 15 C 1.52996 * 109.47129 * 155.04297 * 12 11 10 16 16 C 1.50702 * 109.47478 * 294.99891 * 15 12 11 17 17 H 1.08003 * 119.99757 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00290 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00096 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47117 * 59.99940 * 20 18 16 22 22 H 1.48496 * 109.46980 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47063 * 300.00357 * 20 18 16 24 24 H 1.08998 * 109.46965 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47239 * 59.99608 * 1 2 3 26 26 H 1.08999 * 109.47055 * 299.99848 * 1 2 3 27 27 H 1.08002 * 119.99766 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46675 * 30.26163 * 6 5 4 29 29 H 1.08998 * 109.47007 * 150.25677 * 6 5 4 30 30 H 1.00892 * 111.00223 * 56.04678 * 7 6 5 31 31 H 1.00908 * 110.99642 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.92930 * 179.74101 * 8 5 4 33 33 H 1.07998 * 120.00540 * 179.97438 * 9 8 5 34 34 H 1.08999 * 109.47561 * 59.99393 * 14 12 11 35 35 H 1.08999 * 109.47426 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.47285 * 299.99582 * 14 12 11 37 37 H 1.09004 * 109.47372 * 54.99841 * 15 12 11 38 38 H 1.09006 * 109.47436 * 174.99960 * 15 12 11 39 39 H 0.96998 * 120.00428 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6057 -0.0004 6 6 1.1016 4.8697 -0.0008 7 7 0.8353 5.2801 -1.3860 8 6 3.3029 3.6799 0.0000 9 6 4.0603 2.5234 -0.0001 10 6 3.4359 1.2864 0.0000 11 8 4.1795 0.1477 -0.0006 12 6 5.5955 0.2975 0.1206 13 1 5.8170 1.1402 0.7755 14 6 6.2013 0.5523 -1.2610 15 6 6.1947 -0.9798 0.7125 16 6 5.6915 -1.1649 2.1209 17 1 5.0119 -0.4438 2.5507 18 6 6.0978 -2.2553 2.8605 19 7 6.9249 -3.1336 2.3370 20 14 5.4746 -2.4843 4.6066 21 1 3.9935 -2.5915 4.5935 22 1 6.0561 -3.7241 5.1810 23 1 5.8792 -1.3190 5.4334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 0.2146 2.3196 -0.0107 28 1 0.1572 4.6897 0.5128 29 1 1.6500 5.6591 0.5131 30 1 0.3847 4.5396 -1.9022 31 1 0.2863 6.1263 -1.4131 32 1 3.7908 4.6434 0.0000 33 1 5.1386 2.5839 -0.0002 34 1 5.7744 1.4622 -1.6828 35 1 7.2814 0.6661 -1.1688 36 1 5.9799 -0.2904 -1.9160 37 1 5.8984 -1.8353 0.1055 38 1 7.2818 -0.9005 0.7226 39 1 7.2111 -3.9005 2.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:25 Heat of formation + Delta-G solvation = -58.543393 kcal Electronic energy + Delta-G solvation = -20225.030334 eV Core-core repulsion = 17133.099501 eV Total energy + Delta-G solvation = -3091.930833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26468 -38.21921 -37.24890 -34.36474 -33.26928 -31.55225 -30.06051 -29.36707 -27.44360 -27.16132 -24.61491 -23.20970 -22.44944 -21.20485 -19.77671 -18.07818 -16.93983 -16.33740 -16.14597 -15.84965 -15.54797 -14.73516 -14.61595 -14.53537 -14.18394 -14.10398 -13.59734 -13.15576 -12.73131 -12.38438 -12.05375 -11.90854 -11.74130 -11.72996 -11.36394 -11.23100 -10.94099 -10.80416 -10.72341 -10.65523 -10.38364 -9.93762 -9.32489 -9.07270 -8.90966 -8.41112 -8.32966 -7.32721 -5.96141 -3.96775 1.53778 1.71067 3.38087 3.41343 3.45697 3.55074 3.88473 3.97791 4.51031 4.58792 4.81810 4.94072 5.14551 5.21384 5.25278 5.31803 5.41043 5.47253 5.58247 5.60420 5.67690 5.77686 5.83087 5.91727 6.04406 6.25281 6.35391 6.49984 6.67735 6.71681 6.84073 6.90446 6.97120 7.22688 7.43410 7.59297 7.70955 8.00568 8.25596 8.43412 9.06282 9.65953 11.15448 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.005198 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.555920 B = 5385.815464 C = 5831.702972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.087 3.913 4 C -0.169 4.169 5 C -0.107 4.107 6 C 0.110 3.890 7 N -0.846 5.846 8 C -0.092 4.092 9 C -0.184 4.184 10 C 0.129 3.871 11 O -0.279 6.279 12 C 0.085 3.915 13 H 0.062 0.938 14 C -0.177 4.177 15 C 0.026 3.974 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.341 0.659 31 H 0.339 0.661 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.192 13.864 -6.408 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.212 6.212 3 C 0.042 3.958 4 C -0.188 4.188 5 C -0.108 4.108 6 C -0.020 4.020 7 N -0.376 5.376 8 C -0.111 4.111 9 C -0.203 4.203 10 C 0.081 3.919 11 O -0.192 6.192 12 C 0.029 3.971 13 H 0.080 0.920 14 C -0.235 4.235 15 C -0.010 4.010 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.270 13.359 -6.436 18.625 hybrid contribution -1.426 -0.074 1.253 1.900 sum -12.696 13.286 -5.183 19.093 Atomic orbital electron populations 1.22984 0.79563 1.03652 1.00455 1.86282 1.20105 1.25807 1.89032 1.18254 0.89501 0.84912 1.03124 1.20767 0.99065 0.91253 1.07721 1.19237 0.93858 0.93182 1.04529 1.20573 0.97091 0.94729 0.89562 1.58715 1.56108 1.09101 1.13665 1.20633 0.92748 0.97638 1.00035 1.21197 1.00796 0.91089 1.07240 1.18517 0.88597 0.87338 0.97428 1.86385 1.20219 1.26684 1.85887 1.22884 0.76787 1.02578 0.94829 0.92040 1.22414 1.01198 1.01481 0.98399 1.19254 0.95598 0.90260 0.95926 1.21083 1.27347 1.08466 0.98023 0.92715 1.24958 0.95165 0.95856 0.98313 1.69939 1.33740 1.12842 1.37238 0.86652 0.79272 0.77324 0.84763 1.20203 1.21300 1.20302 0.88457 0.93332 0.93204 0.85774 0.95165 0.90362 0.84637 0.84892 0.86076 0.84465 0.93265 0.91414 0.91927 0.95271 0.94400 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.46 10.28 -34.24 -0.35 -5.81 16 3 C 0.09 1.57 6.70 -39.12 -0.26 1.31 16 4 C -0.17 -2.40 8.69 -39.46 -0.34 -2.74 16 5 C -0.11 -1.44 5.39 -104.62 -0.56 -2.00 16 6 C 0.11 1.12 6.91 -4.98 -0.03 1.09 16 7 N -0.85 -7.72 9.61 -11.41 -0.11 -7.83 16 8 C -0.09 -1.32 9.69 -39.57 -0.38 -1.70 16 9 C -0.18 -3.09 8.24 -39.46 -0.33 -3.42 16 10 C 0.13 2.53 6.61 -39.12 -0.26 2.27 16 11 O -0.28 -6.38 9.34 -34.22 -0.32 -6.70 16 12 C 0.08 1.83 2.17 -26.74 -0.06 1.77 16 13 H 0.06 1.28 6.32 -51.93 -0.33 0.95 16 14 C -0.18 -3.14 9.17 37.15 0.34 -2.80 16 15 C 0.03 0.69 4.68 -27.88 -0.13 0.56 16 16 C -0.51 -14.87 8.88 -34.44 -0.31 -15.17 16 17 H 0.05 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.48 7.65 -51.93 -0.40 0.09 16 26 H 0.05 0.53 7.68 -51.93 -0.40 0.14 16 27 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 28 H 0.03 0.27 8.09 -51.93 -0.42 -0.15 16 29 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.34 2.96 8.98 -39.30 -0.35 2.60 16 31 H 0.34 2.27 9.08 -39.29 -0.36 1.91 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.14 2.18 5.43 -52.49 -0.28 1.89 16 34 H 0.05 0.77 6.91 -51.93 -0.36 0.42 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -33.16 325.12 -7.32 -40.48 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.73 Total: 2.07 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.43 Total: -17.89 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.63 Total: -34.39 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.67 Total: -12.52 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.16 -7.32 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.066 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds