Wall clock time and date at job start Mon Mar 30 2020 07:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00072 * 2 1 4 4 C 1.38564 * 120.07337 * 359.72355 * 3 2 1 5 5 C 1.38238 * 120.00064 * 179.74073 * 4 3 2 6 6 C 1.50704 * 119.92929 * 180.25521 * 5 4 3 7 7 N 1.46897 * 109.47158 * 270.26229 * 6 5 4 8 8 C 1.38250 * 120.14617 * 0.51913 * 5 4 3 9 9 C 1.38248 * 120.14766 * 359.76081 * 8 5 4 10 10 C 1.38564 * 119.99576 * 359.97438 * 9 8 5 11 11 O 1.35995 * 120.07072 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00127 * 5.49062 * 11 10 9 13 13 H 1.09004 * 109.46802 * 35.04360 * 12 11 10 14 14 C 1.52992 * 109.46918 * 275.04481 * 12 11 10 15 15 C 1.52996 * 109.47129 * 155.04297 * 12 11 10 16 16 C 1.50702 * 109.47478 * 294.99891 * 15 12 11 17 17 H 1.08003 * 119.99757 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00290 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00096 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47117 * 59.99940 * 20 18 16 22 22 H 1.48496 * 109.46980 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47063 * 300.00357 * 20 18 16 24 24 H 1.08998 * 109.46965 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47239 * 59.99608 * 1 2 3 26 26 H 1.08999 * 109.47055 * 299.99848 * 1 2 3 27 27 H 1.08002 * 119.99766 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46675 * 30.26163 * 6 5 4 29 29 H 1.08998 * 109.47007 * 150.25677 * 6 5 4 30 30 H 1.00892 * 111.00223 * 56.04678 * 7 6 5 31 31 H 1.00908 * 110.99642 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.92930 * 179.74101 * 8 5 4 33 33 H 1.07998 * 120.00540 * 179.97438 * 9 8 5 34 34 H 1.08999 * 109.47561 * 59.99393 * 14 12 11 35 35 H 1.08999 * 109.47426 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.47285 * 299.99582 * 14 12 11 37 37 H 1.09004 * 109.47372 * 54.99841 * 15 12 11 38 38 H 1.09006 * 109.47436 * 174.99960 * 15 12 11 39 39 H 0.96998 * 120.00428 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6057 -0.0004 6 6 1.1016 4.8697 -0.0008 7 7 0.8353 5.2801 -1.3860 8 6 3.3029 3.6799 0.0000 9 6 4.0603 2.5234 -0.0001 10 6 3.4359 1.2864 0.0000 11 8 4.1795 0.1477 -0.0006 12 6 5.5955 0.2975 0.1206 13 1 5.8170 1.1402 0.7755 14 6 6.2013 0.5523 -1.2610 15 6 6.1947 -0.9798 0.7125 16 6 5.6915 -1.1649 2.1209 17 1 5.0119 -0.4438 2.5507 18 6 6.0978 -2.2553 2.8605 19 7 6.9249 -3.1336 2.3370 20 14 5.4746 -2.4843 4.6066 21 1 3.9935 -2.5915 4.5935 22 1 6.0561 -3.7241 5.1810 23 1 5.8792 -1.3190 5.4334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 0.2146 2.3196 -0.0107 28 1 0.1572 4.6897 0.5128 29 1 1.6500 5.6591 0.5131 30 1 0.3847 4.5396 -1.9022 31 1 0.2863 6.1263 -1.4131 32 1 3.7908 4.6434 0.0000 33 1 5.1386 2.5839 -0.0002 34 1 5.7744 1.4622 -1.6828 35 1 7.2814 0.6661 -1.1688 36 1 5.9799 -0.2904 -1.9160 37 1 5.8984 -1.8353 0.1055 38 1 7.2818 -0.9005 0.7226 39 1 7.2111 -3.9005 2.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:25 Heat of formation + Delta-G solvation = -81.586308 kcal Electronic energy + Delta-G solvation = -20226.029550 eV Core-core repulsion = 17133.099501 eV Total energy + Delta-G solvation = -3092.930049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54113 -39.64333 -38.40254 -35.67928 -34.94559 -33.36431 -31.24249 -30.52123 -29.37010 -28.18585 -25.76504 -25.04377 -23.78583 -22.41890 -21.31624 -19.42498 -18.53692 -18.13068 -17.47866 -16.81849 -16.62034 -16.54117 -15.95212 -15.59750 -15.46683 -15.35909 -14.87480 -14.40945 -14.24995 -13.77874 -13.68091 -13.41073 -13.28956 -12.98396 -12.80710 -12.73784 -12.64636 -12.39678 -12.09258 -11.95114 -11.86522 -11.71172 -11.29766 -11.05694 -10.59024 -9.69619 -9.50915 -8.64292 -8.21302 -6.30178 0.34141 0.49773 1.35835 1.39704 1.47594 2.39635 2.44606 2.47708 2.75690 3.12820 3.74687 3.89105 3.97770 4.00193 4.12082 4.22906 4.28794 4.35134 4.38725 4.42776 4.46907 4.63619 4.68059 4.71753 4.79142 4.92559 5.01660 5.16275 5.19821 5.31567 5.43024 5.48041 5.62798 5.75388 5.83660 6.18132 6.23337 6.34977 6.65481 6.79129 6.85391 7.36752 8.90459 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.005198 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.555920 B = 5385.815464 C = 5831.702972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.068 3.932 4 C -0.160 4.160 5 C -0.095 4.095 6 C 0.113 3.887 7 N -0.853 5.853 8 C -0.096 4.096 9 C -0.185 4.185 10 C 0.080 3.920 11 O -0.316 6.316 12 C 0.093 3.907 13 H 0.065 0.935 14 C -0.166 4.166 15 C 0.030 3.970 16 C -0.531 4.531 17 H 0.047 0.953 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.155 0.845 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.344 0.656 31 H 0.354 0.646 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.053 0.947 37 H -0.005 1.005 38 H 0.027 0.973 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.048 16.350 -5.974 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.023 3.977 4 C -0.180 4.180 5 C -0.096 4.096 6 C -0.017 4.017 7 N -0.385 5.385 8 C -0.115 4.115 9 C -0.204 4.204 10 C 0.033 3.967 11 O -0.231 6.231 12 C 0.037 3.963 13 H 0.083 0.917 14 C -0.223 4.223 15 C -0.007 4.007 16 C -0.569 4.569 17 H 0.065 0.935 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.189 1.189 24 H 0.126 0.874 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.013 0.987 38 H 0.045 0.955 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.146 15.877 -6.012 21.472 hybrid contribution -0.971 -0.767 1.077 1.640 sum -14.117 15.110 -4.935 21.259 Atomic orbital electron populations 1.23303 0.76819 1.05132 1.02214 1.86215 1.23200 1.26787 1.89348 1.18603 0.89340 0.85983 1.03774 1.21092 1.00402 0.90240 1.06217 1.19719 0.93928 0.94391 1.01524 1.20583 0.97427 0.93149 0.90514 1.58653 1.56932 1.09990 1.12946 1.20969 0.93397 0.97736 0.99358 1.21324 1.01195 0.90988 1.06900 1.18964 0.89410 0.87246 1.01038 1.86275 1.20321 1.29142 1.87332 1.22584 0.77254 0.99714 0.96745 0.91675 1.22300 1.01976 1.02090 0.95950 1.19099 0.95159 0.91687 0.94762 1.21394 1.27337 1.08668 0.99452 0.93487 1.25850 0.95256 0.95438 1.02807 1.70056 1.34734 1.13339 1.38982 0.85588 0.78516 0.77977 0.79518 1.20106 1.20157 1.18914 0.87363 0.91023 0.91753 0.82720 0.93387 0.89362 0.84300 0.83106 0.83599 0.84256 0.91050 0.89844 0.92818 0.98683 0.95509 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -12.64 10.28 -79.68 -0.82 -13.45 16 3 C 0.07 2.44 6.70 22.57 0.15 2.59 16 4 C -0.16 -4.20 8.69 22.35 0.19 -4.01 16 5 C -0.09 -2.26 5.39 -19.86 -0.11 -2.36 16 6 C 0.11 1.83 6.91 85.56 0.59 2.42 16 7 N -0.85 -12.31 9.61 -190.01 -1.83 -14.14 16 8 C -0.10 -2.55 9.69 22.28 0.22 -2.33 16 9 C -0.19 -6.13 8.24 22.35 0.18 -5.94 16 10 C 0.08 3.19 6.61 22.57 0.15 3.34 16 11 O -0.32 -15.18 9.34 -79.63 -0.74 -15.92 16 12 C 0.09 4.16 2.17 30.59 0.07 4.23 16 13 H 0.07 2.80 6.32 -2.38 -0.02 2.79 16 14 C -0.17 -5.95 9.17 71.98 0.66 -5.29 16 15 C 0.03 1.65 4.68 29.85 0.14 1.79 16 16 C -0.53 -32.02 8.88 25.60 0.23 -31.80 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.00 0.25 5.46 84.65 0.46 0.72 16 19 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 20 Si 0.96 46.49 29.54 68.60 2.03 48.52 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 24 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 26 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16 27 H 0.16 2.98 6.30 -2.91 -0.02 2.96 16 28 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.34 4.72 8.98 -89.70 -0.81 3.92 16 31 H 0.35 3.38 9.08 -89.69 -0.81 2.56 16 32 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.14 4.38 5.43 -2.91 -0.02 4.36 16 34 H 0.07 2.22 6.91 -2.39 -0.02 2.20 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 38 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.67 325.12 2.41 -72.26 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.55 Total: 15.59 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 4.05 Total: -35.08 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.54 Total: -71.91 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.56 Total: -29.37 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.67 2.41 -72.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.327 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds