Wall clock time and date at job start Mon Mar 30 2020 07:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48502 * 109.47045 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.47277 * 30.00426 * 3 2 1 6 6 H 1.48498 * 109.47156 * 150.00508 * 3 2 1 7 7 C 1.37879 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47030 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46845 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99975 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00096 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47211 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.35659 * 308.86683 * 16 15 13 18 18 C 1.54578 * 110.50232 * 71.25221 * 16 15 13 19 19 C 1.55930 * 104.64437 * 118.84336 * 18 16 15 20 20 H 1.08992 * 116.53392 * 160.39899 * 19 18 16 21 21 C 1.55927 * 104.49402 * 289.72517 * 19 18 16 22 22 C 1.54578 * 104.64779 * 70.27733 * 21 19 18 23 23 C 1.55916 * 110.40547 * 186.53678 * 16 15 13 24 24 H 1.08998 * 116.53393 * 80.69401 * 23 16 15 25 25 C 1.56949 * 100.65355 * 207.31315 * 23 16 15 26 26 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47608 * 59.99484 * 9 7 2 28 28 H 1.09001 * 109.46837 * 299.99720 * 9 7 2 29 29 H 1.08996 * 109.47361 * 59.99997 * 10 9 7 30 30 H 1.09001 * 109.47224 * 299.99739 * 10 9 7 31 31 H 1.09001 * 109.47071 * 60.00351 * 11 10 9 32 32 H 1.08993 * 109.46940 * 299.99873 * 11 10 9 33 33 H 0.97002 * 120.00232 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47031 * 59.99924 * 15 13 12 35 35 H 1.09001 * 109.47164 * 299.99708 * 15 13 12 36 36 H 1.09007 * 110.40459 * 0.05397 * 18 16 15 37 37 H 1.08995 * 110.40780 * 237.63301 * 18 16 15 38 38 H 1.09008 * 110.40236 * 189.06689 * 21 19 18 39 39 H 1.09000 * 110.40540 * 311.36637 * 21 19 18 40 40 H 1.09003 * 110.40662 * 118.78702 * 22 21 19 41 41 H 1.09001 * 110.40620 * 241.20776 * 22 21 19 42 42 H 1.09004 * 112.02488 * 296.82509 * 25 23 16 43 43 H 1.09008 * 112.02753 * 170.30506 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0037 13 6 1.9829 -7.3714 -0.0047 14 8 0.7905 -7.5930 -0.0048 15 6 2.9622 -8.5168 -0.0045 16 6 2.1972 -9.8418 -0.0052 17 1 1.4519 -9.8497 0.7902 18 6 1.5242 -10.0777 -1.3766 19 6 2.1664 -11.3948 -1.9096 20 1 1.6190 -11.9221 -2.6907 21 6 3.6354 -11.0012 -2.2538 22 6 4.3085 -10.7653 -0.8824 23 6 3.1827 -11.0385 0.1614 24 1 3.5163 -11.2570 1.1758 25 6 2.3828 -12.1764 -0.5658 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 2.8719 -3.6051 0.8872 30 1 2.8718 -3.6036 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8539 -5.0453 0.8868 33 1 3.3859 -5.9234 -0.0039 34 1 3.5882 -8.4595 0.8860 35 1 3.5896 -8.4586 -0.8940 36 1 1.7385 -9.2498 -2.0525 37 1 0.4481 -10.2017 -1.2555 38 1 4.1316 -11.8129 -2.7860 39 1 3.6547 -10.0891 -2.8504 40 1 5.1355 -11.4610 -0.7402 41 1 4.6587 -9.7361 -0.8029 42 1 1.4402 -12.3975 -0.0652 43 1 2.9856 -13.0736 -0.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:53 Heat of formation + Delta-G solvation = -65.292607 kcal Electronic energy + Delta-G solvation = -19855.249649 eV Core-core repulsion = 16898.859242 eV Total energy + Delta-G solvation = -2956.390407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85551 -39.02877 -35.38906 -33.29985 -32.33673 -31.11048 -30.04235 -28.78591 -27.07002 -25.47463 -23.02046 -21.89802 -20.70614 -20.20029 -19.93010 -18.44242 -17.05604 -16.48267 -16.37835 -15.62109 -15.29565 -15.18809 -14.52899 -14.37201 -13.96441 -13.36587 -12.85152 -12.69390 -12.29984 -12.27090 -11.85034 -11.76974 -11.57228 -11.51933 -11.47225 -11.15485 -10.93569 -10.90649 -10.72934 -10.66902 -10.59692 -10.42575 -10.01319 -9.86443 -9.78456 -9.32364 -9.10807 -8.72681 -8.37761 -6.02321 -4.05498 2.86263 3.30297 3.36535 3.39025 3.46209 4.24662 4.28988 4.30437 4.43897 4.88915 4.91051 4.93604 5.04035 5.12176 5.19719 5.29394 5.33288 5.33415 5.38700 5.51615 5.59162 5.64994 5.73406 5.76386 5.79399 5.86230 5.94180 5.98617 6.02260 6.16205 6.17333 6.20838 6.32296 6.53034 6.60591 6.85322 7.01240 7.63112 7.75865 7.77129 7.96532 8.37298 8.47486 9.01271 9.58708 11.09023 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050801 B = 0.002773 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.032980 B =10094.118833 C =10285.712758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.730 5.730 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.138 4.138 16 C -0.070 4.070 17 H 0.080 0.920 18 C -0.105 4.105 19 C -0.109 4.109 20 H 0.094 0.906 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.101 4.101 24 H 0.097 0.903 25 C -0.124 4.124 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -23.902 -1.669 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.381 5.381 13 C 0.290 3.710 14 O -0.420 6.420 15 C -0.178 4.178 16 C -0.089 4.089 17 H 0.099 0.901 18 C -0.142 4.142 19 C -0.127 4.127 20 H 0.112 0.888 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.120 4.120 24 H 0.115 0.885 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.948 -23.907 -1.671 25.249 hybrid contribution 0.927 1.204 -0.023 1.520 sum 8.876 -22.703 -1.694 24.436 Atomic orbital electron populations 1.69967 1.06073 1.26697 1.50562 1.25035 0.94860 0.99319 0.95276 0.86577 0.79796 0.83418 0.78100 1.20649 1.21191 1.19893 1.21206 0.92986 0.90964 1.50932 0.92657 1.19028 0.93860 0.90884 0.97626 1.21882 0.99734 0.93436 1.00794 1.21615 0.91940 0.85259 1.01838 1.46264 1.10663 1.06112 1.75017 1.20728 0.89900 0.84115 0.76240 1.90691 1.17011 1.84833 1.49503 1.21914 0.98335 0.93389 1.04123 1.21901 0.96607 0.91635 0.98771 0.90145 1.22572 0.99803 0.96254 0.95612 1.23613 0.95930 0.96313 0.96850 0.88760 1.22615 0.95458 1.00945 0.96875 1.22777 0.97413 1.01781 0.94693 1.23615 0.95340 0.94995 0.98014 0.88525 1.23558 0.99724 0.96928 0.95919 0.92915 0.96319 0.96292 0.92782 0.92791 0.91927 0.91918 0.76946 0.89126 0.88642 0.91928 0.91576 0.92217 0.91844 0.92144 0.90986 0.91293 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.12 2.08 5.68 -4.04 -0.02 2.05 16 12 N -0.73 -10.39 5.56 -60.29 -0.33 -10.72 16 13 C 0.50 7.25 7.54 -10.98 -0.08 7.17 16 14 O -0.54 -9.98 15.29 5.55 0.08 -9.90 16 15 C -0.14 -1.37 4.03 -27.88 -0.11 -1.48 16 16 C -0.07 -0.71 2.27 -88.23 -0.20 -0.91 16 17 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 18 C -0.10 -1.12 5.02 -24.34 -0.12 -1.25 16 19 C -0.11 -0.92 5.19 -85.35 -0.44 -1.37 16 20 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 21 C -0.12 -0.95 6.21 -24.34 -0.15 -1.10 16 22 C -0.13 -0.95 5.86 -24.33 -0.14 -1.09 16 23 C -0.10 -0.81 4.92 -85.36 -0.42 -1.23 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 C -0.12 -0.97 6.42 -22.45 -0.14 -1.12 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.40 4.50 8.47 -40.82 -0.35 4.15 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.82 6.20 -51.93 -0.32 0.50 16 36 H 0.06 0.74 7.28 -51.93 -0.38 0.36 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.51 5.44 -51.93 -0.28 0.22 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -31.84 336.07 -9.61 -41.45 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.60 Total: -0.35 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.53 Total: -15.83 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.40 Total: -36.96 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.84 -9.61 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.842 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds